Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci15g0442 ATGCTACGGACGAATGCATTTGAAGGAGCGAATGTGTTCATGTCACGGAACCTCGTGCCGCCGGAAGTCTTCGACACACTCCACGACGCGCTTAAGAATAATGGCGCACGCGTCCATCTTTGCTGCGACCCTTCGCGCAATGGGCCACACGACTATCACATCATATCTCACGATCACGAGAAACTTGAGGATCTTAAAGCCAGGGGTTGTAATCTGCTTGGTCCTCAGTGTGTGCTTTCATGTGCAAAAGAACAGAGACCTCTGCCTAAACAGGGTTTCACTTGTTGCCTTGCCATGGACGGTGTCAAAGTACTTGCATCTGGTTTTGATATGGATGAGAAGATGAAGATAGGAGAGTTAGTAAATTCAATGGGGGGAATTCTGCACATTAAGGCATCACTGGATGTAAACTTTGTGATTGTGAAAAATGTTTTAGCTGCAAAGTACAAGTGGGCTTTGAATATGCTGAAGAAACCAATAGTCACTTTTAATTGGTTAAAGCAATGCTCCATTGAGCATCGCATTGTTCCCCAAGAGTCATACAGGATTCTTCCCTTTTCTGGGTTGACAATTTGTGTTACCCGAATTCCAGCAGATGAGCGCAGAAAAATTGAGATGCTTATTGTACAGAATGGTGGGAAATACTCTGCGGAGCTAACGAAGAAGTGCACACATTTGATTTCTGATGCTCCTGAAGGTGACAAATATAAGGTGGCAAAACGATGGGGTCACATTCATATTGTGACAAAGAAATGGTTTGATCAGTCTATTGTCAGAAGAGCATGTCTGAATGAGGAGTCTTACCCCGTTCAGCAAGGACCTGTATCTTCACAAAGAATGTTTATGGATAATTTAACAGCACAACATAGCCAAGAAAAAGAAAACGGGAAATTGCAATCTGCTGCATCATCTGGACTTCCAGATTCATGTATGCCTGTTGTTTCCTTTGCTGAGCTTGCGGACAGAGATCCAGATGCTACACAGTCAGAGAACACTTCTATTGCCGTTTCAGATGTTCCTATCTTTGTTAATGGGACAGATCCTCAAGCACCTCCAGTGCAACCCAATAATGACCCAAACCTTGACAGTGCTGTAGCCAGGGATTCTGAATCTGATGATAATGATCTGTACTTATCAGAATGCAGGATATCACTTGTTGGCTTTGAAGCTTCTGAAATGCGTAAACTAGTTAATATGGTTCGTAAAGGAGGAGGATCCAGATATATGTCTCTTAATGACAAGTTGACACACATAGTGATCGGAACCCCTTCAGAAATAGAAAAGAAGGATGTAAGGAGTCTTGCTGCTTTGGGTATCATCTACGTTGTTAAAACTACATGGCTTGAAGATTGTGACCATGAAAAGAAAGAAGTCCCTGTTCTAAAGAGACACATTGCCCAAGATCTTCTTCTTCCTAAAGGTTCAGCATCTTTTGTGAAAGGAGCTGTAACTGGAATTATGGGCATGAATAAAGGTAAAGGCCCCAGCACTCATCAAAGCTTGCAGGCTGATCAGTTGATAACTAGTATGGACTCTAGAGTTGTGATGCCATTATCTGTGGAGAAAAAAGAAGAAAAGAAGCTGGAGATGAATGTGACTGATCAAACTTTTCTTAAATCAATGGACAAGTCAACTCAGAAAACGCAACTTCCTGTTGCTAATAATAAAATGAAGGGTCAAAAGAAGATGCTTAATGACTCTTCTCAGTGTGTGAAGCCATCAACAGTTTTCTGCGGGAGGATGTTTTGTTTTTCAAATTCTTTCCCTGAAGAGAGAAGAGATGAGGTTGTTCAATGGATAAGTCAGGGGGGAGGTGAGTTAGTAGATGGTCACGCAAAACAGAATGCCCATTATACTATTGAGTGTCATGGTGTAACAAGTAGGTTGGAAGATATTTCCCAAACAACGTGCATTTCCAGTCATTGGATACGATCTTGTTTAGAGGGGAAAGACAGAATGCTGCTGAGGAACTTGTGCTTTGTTCTTGGAGCTACATTTGTGGAGAAGTTGACAAAGAAAGTCACACATTTATTATGCAAATTCATCAATGGGCCCAAGTATGAGGCAGCTTGTAAGTGGGGGATCCAGGTGGTTACCGCTGAATGGATATTTGAATGTGTCAAACAGAATAAAGTTGTTGTTGTTGACCAATTTTTACCCAAAGAAGTCACTGTTCAAGATCAAGAGAACCAAGAGGCAGGAGTGTTTACTGTGAGTCAATTTCCTAACCCGGCTGATAGCATTAGAGGAGACAGCTCTGCCCAATTTGCGAGTCGATTGATAAATTTGAGAAACATCTCAAGTCAAAGTGTGGGTAGTCAAGTCAACAATTATGGGGTTGATGCTAAAATATCAAGTGTTTGTTGCAAAAAGGCAAGGCTTTTGGAAGAGTCTGGCCTGTATGTTACAGTGCCTTCTCCTGTAGCTTCAGCTACTCCTATCTACGATATGAGTTCTACTGGAAACAACATGCTAATAGATACTACTAGTGAGGTTTCTCCAGCTGCTCCTGATGTCGCTGCTGCAATTGAGGACTTGTTAGAGCAGACTAGTAAGATGCACGATCAGACATCTCCGAGGAAGACCGTGAATAAGTGTAACAATTTTTCATCTGATTGTTCTGTTCTGGATGAAAATCAATCAAATCCTCATACTGTCACTGGATTTTCTGAACACTGGTTGAACAGAAGTAGAAGAAACGAGGATAATGATGTTGCTTCTCGAGATGGAAGAGCAGCTTATGATAATTTTAGTGAAACACAAACTGAATCTCAGGTTGTTGGTTATGAAGAAGATTTGTCTGGAAGACAAATGCTTATCGACAGAGTCCGAACACGTAGTAGTATGGCTTGA 2853 0.4168 MLRTNAFEGANVFMSRNLVPPEVFDTLHDALKNNGARVHLCCDPSRNGPHDYHIISHDHEKLEDLKARGCNLLGPQCVLSCAKEQRPLPKQGFTCCLAMDGVKVLASGFDMDEKMKIGELVNSMGGILHIKASLDVNFVIVKNVLAAKYKWALNMLKKPIVTFNWLKQCSIEHRIVPQESYRILPFSGLTICVTRIPADERRKIEMLIVQNGGKYSAELTKKCTHLISDAPEGDKYKVAKRWGHIHIVTKKWFDQSIVRRACLNEESYPVQQGPVSSQRMFMDNLTAQHSQEKENGKLQSAASSGLPDSCMPVVSFAELADRDPDATQSENTSIAVSDVPIFVNGTDPQAPPVQPNNDPNLDSAVARDSESDDNDLYLSECRISLVGFEASEMRKLVNMVRKGGGSRYMSLNDKLTHIVIGTPSEIEKKDVRSLAALGIIYVVKTTWLEDCDHEKKEVPVLKRHIAQDLLLPKGSASFVKGAVTGIMGMNKGKGPSTHQSLQADQLITSMDSRVVMPLSVEKKEEKKLEMNVTDQTFLKSMDKSTQKTQLPVANNKMKGQKKMLNDSSQCVKPSTVFCGRMFCFSNSFPEERRDEVVQWISQGGGELVDGHAKQNAHYTIECHGVTSRLEDISQTTCISSHWIRSCLEGKDRMLLRNLCFVLGATFVEKLTKKVTHLLCKFINGPKYEAACKWGIQVVTAEWIFECVKQNKVVVVDQFLPKEVTVQDQENQEAGVFTVSQFPNPADSIRGDSSAQFASRLINLRNISSQSVGSQVNNYGVDAKISSVCCKKARLLEESGLYVTVPSPVASATPIYDMSSTGNNMLIDTTSEVSPAAPDVAAAIEDLLEQTSKMHDQTSPRKTVNKCNNFSSDCSVLDENQSNPHTVTGFSEHWLNRSRRNEDNDVASRDGRAAYDNFSETQTESQVVGYEEDLSGRQMLIDRVRTRSSMA 950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci15g0442 950 Gene3D BRCT domain 185 272 IPR036420 -
Prci15g0442 950 SUPERFAMILY BRCT domain 58 183 IPR036420 -
Prci15g0442 950 SMART BRCT_7 183 260 IPR001357 -
Prci15g0442 950 SMART BRCT_7 4 85 IPR001357 -
Prci15g0442 950 SMART BRCT_7 96 173 IPR001357 -
Prci15g0442 950 SMART BRCT_7 375 455 IPR001357 -
Prci15g0442 950 SMART BRCT_7 635 710 IPR001357 -
Prci15g0442 950 SUPERFAMILY BRCT domain 637 721 IPR036420 -
Prci15g0442 950 ProSiteProfiles BRCT domain profile. 99 183 IPR001357 -
Prci15g0442 950 CDD BRCT 102 169 - -
Prci15g0442 950 PANTHER DNA REPLICATION REGULATOR DPB11-RELATED 8 948 - -
Prci15g0442 950 SUPERFAMILY BRCT domain 185 270 IPR036420 -
Prci15g0442 950 Pfam twin BRCT domain 648 702 IPR001357 -
Prci15g0442 950 Pfam twin BRCT domain 189 252 IPR001357 -
Prci15g0442 950 SUPERFAMILY BRCT domain 371 459 IPR036420 -
Prci15g0442 950 SUPERFAMILY BRCT domain 573 650 IPR036420 -
Prci15g0442 950 ProSiteProfiles BRCT domain profile. 572 648 IPR001357 -
Prci15g0442 950 CDD BRCT 645 706 - -
Prci15g0442 950 FunFam Transcription coactivator 569 662 - -
Prci15g0442 950 ProSiteProfiles BRCT domain profile. 651 720 IPR001357 -
Prci15g0442 950 FunFam DNA topoisomerase II binding protein 1 186 278 - -
Prci15g0442 950 CDD BRCT_TopBP1_rpt2_like 185 257 - -
Prci15g0442 950 Gene3D BRCT domain 45 93 IPR036420 -
Prci15g0442 950 Gene3D BRCT domain 360 463 IPR036420 -
Prci15g0442 950 MobiDBLite consensus disorder prediction 344 371 - -
Prci15g0442 950 ProSiteProfiles BRCT domain profile. 186 270 IPR001357 -
Prci15g0442 950 ProSiteProfiles BRCT domain profile. 373 465 IPR001357 -
Prci15g0442 950 Gene3D BRCT domain 653 737 IPR036420 -
Prci15g0442 950 FunFam Transcription coactivator 96 184 - -
Prci15g0442 950 FunFam Transcription coactivator 355 465 - -
Prci15g0442 950 Gene3D BRCT domain 570 652 IPR036420 -
Prci15g0442 950 Gene3D BRCT domain 97 184 IPR036420 -
Prci15g0442 950 Pfam BRCA1 C Terminus (BRCT) domain 375 451 IPR001357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci15g0442 Prci-Chr15 2831306 2846444 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci15g0442 1 950 Core DNA Replication Machinery Family AT1G77320 48.541 0.0 871
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci15g0442 K10728 - qsa:O6P43_015132 1190.25