Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci15g0431 ATGGTAAGGGTTTGCTACTGCATTTGTCTCTGTATCTCTCCCCAAATTTTCACCATTAATCCAAAGCAAGAAGATCACCAGAGAGAGGGGAAGAGAAAGAGTTTGCCGAGAGAGATGGGGAGGGGTAAGATTGAGATCAAGAGAATTGAGAACTCAAGCAACAGGCAAGTGACGTACTCGAAGAGGAAGAATGGGATCTTAAAGAAGGCGAAGGAAATTACTGTTCTATGCGATGCCCAAGTTTCCCTTATCATCTTTGCTGCATCTGGGAAAATGCATGAATACATCAGCCCTTCAACCACGTTGATTGACATCCTAGAAAGATATCACAAAACGTCTGGGAAGAGGCTCTGGGACGCTAAGCATGAGGACTTAAACAACGAAATTGATAGACTCAAGAAAGAGAATGACAGTATGCAAATTGAGCTCAGGCACTTGAAGGGAGAGGATGTAAACCAGCTTAATTACAAGGAACTGATGGCCCTAGAGGATGCCTTAGAATGTGGCCTCGACGGTGTACGGGAGAGACAGAATTGCTGTTTTTACGCAGATGGAGATTTACAGGGCACACAGGAGAAATGGCAAGATCCTGGAGGAAGAGAACAGGGAGCTCAATTTTATACTGCAACGTTTGGCTATGGAAGGAGCGAGAGAATTGGAGAATGGATTTGA 672 0.4449 MVRVCYCICLCISPQIFTINPKQEDHQREGKRKSLPREMGRGKIEIKRIENSSNRQVTYSKRKNGILKKAKEITVLCDAQVSLIIFAASGKMHEYISPSTTLIDILERYHKTSGKRLWDAKHEDLNNEIDRLKKENDSMQIELRHLKGEDVNQLNYKELMALEDALECGLDGVRERQNCCFYADGDLQGTQEKWQDPGGREQGAQFYTATFGYGRSERIGEWI 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci15g0431 223 SUPERFAMILY SRF-like 40 134 IPR036879 GO:0003677|GO:0046983
Prci15g0431 223 ProSitePatterns MADS-box domain signature. 41 95 IPR002100 GO:0003677|GO:0046983
Prci15g0431 223 SMART madsneu2 39 98 IPR002100 GO:0003677|GO:0046983
Prci15g0431 223 Gene3D - 51 141 IPR036879 GO:0003677|GO:0046983
Prci15g0431 223 ProSiteProfiles K-box domain profile. 122 209 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci15g0431 223 ProSiteProfiles MADS-box domain profile. 39 99 IPR002100 GO:0003677|GO:0046983
Prci15g0431 223 Pfam K-box region 120 181 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci15g0431 223 Coils Coil 115 149 - -
Prci15g0431 223 CDD MADS_MEF2_like 40 118 IPR033896 GO:0000977|GO:0045944
Prci15g0431 223 PRINTS MADS domain signature 61 76 IPR002100 GO:0003677|GO:0046983
Prci15g0431 223 PRINTS MADS domain signature 76 97 IPR002100 GO:0003677|GO:0046983
Prci15g0431 223 PRINTS MADS domain signature 41 61 IPR002100 GO:0003677|GO:0046983
Prci15g0431 223 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 48 95 IPR002100 GO:0003677|GO:0046983
Prci15g0431 223 PANTHER SERUM RESPONSE FACTOR HOMOLOG 39 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci15g0431 Prci-Chr15 2804297 2808127 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci15g0431 39 182 MADS-box Gene Family AT5G20240 68.056 5.24e-68 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Prci15g0431 K-box 3.1e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci15g0431 K09264 - gmx:100817554 256.529
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci15g0431 15 2804297 2808127 Prci15g0431 15 2804297 2808127 ECH