Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci15g0412 ATGGAAACTGAGGATGGAACAAGCAATGGGGATAACACAGAATGTTCTGAAGCGGTTCAGTGCCTGAAGGGTGCAGCTGTAAATAATGGGGTTGCAGATAGCAATGATGTTGAAAAAGGGGCTCAGCGCTTGGATTGCGAAGCTGTAAATAATGGGGTGGTAATTGCGGGCGGGAACGATGTTGCTCAAGGGGACTCTGCTGTAGTTGAAAGCTTTCGAACTTACAAGAGACGTAGGCATGTAAAGTTGAATCCAGAAAGCAAAGCTCAAGAAGATTGCAGAACATACTCAGAAGCTGCAAGTCGTCTAGCAGGCCAGGCTGTAAAGAAACCATGTAATGTAGCTGTAGGAAATACTTTGGATAAGCATTCACATGCACATTGGGGAAATGTTGTATTAATGCATTTGTATCAGTCACTAGGCGATGATAAAGATGGCATAGAAGGATGCATGAGGGAAGCTCTCATGCGCTATCCTAAAATTAGTTGTGCCACTACTTTAAAGGAAACTTGTAAAATTGACAAAGTTGGAGAAGATTACTCTCCACGCTTTGAGCTGATGTCTCATAGATTACGGAAGGAAGTTAATGGGCATGCAAATGTCTTGTGCAATGGATCTTGTAACGAGTCAAACAGTCCTGATGCAAATGAGATGTGTCAGCGTGTGCTATGTAATATCTTAGTGTCTGAGAAATTCAGTTCGTTATGTAAGGTGCTAATAGAAAATTTTAAAGGAATGAAGCCTGAAAGTGTATTTGACTTCAGTATCATAAACTCAAGGTTGAAAGAGCAAGCTTATGAACAGTCACCCACACTTTTTTTGTCAGATATTCAACAGATTTGGAGAAAACTTCAAGACACTGGTAATGAGATTGTTTCTCTTGCCAAGGGCCTTTCAGACATGTCGAGAACTTTCTACTGTGAGCAGGCTGGAGTTTCACTGCATAGCACATTCAAAGATGGAAAGCAGGAGGAATCTGATTCGCACATGAAACCGGAGCAGACAGAAGATTGTAGCATGTATAAAATTTGCACTTGCAGGCATTGTGGAAACAAAGCAAATGGGAAAGACTGTTTGGTTTGTGATTCATGTGAGGAGATGTTCCATATCTCCTGTATTGAGCCTCCTGTCAAAGAGATACCACACAAGAGCTGGTACTGTGCCAAATGCACTGCCAGTGGAATCGGATCTCCACATGAAAATTGTGTGGTATGTGAAAGGTTGAATGACTCGAGGACCCTGAACTTTGATGAGAACTTCCCTGTAAACGAGGAAACAATTAATGAATTGGAAGAGAATTCAAATTGCACCTATGATGGGGCTCAAGCATCTAGACGAGGGGAAATTGACAAGATCTGCAAAGTTTGTAAAAATGAAGTGGATGAAGGTGAAAGGATTAAAGTCTGTGGTCACTCCTTCTGCTCAGATAAGTACTACCATGTAAGGTGTTTAACAAGTAAACAGTTGACATCATATGGTCCCTGTTGGTACTGCCCTTCTTGCTTATGCCAAGTTTGTCTCACTGATAAAGATGATGATCAGATTGTTATCTGTGATGGCTGTGACGATGCATACCACATATATTGCATGAAACCTGCCCGAACTTCTATTCCCAAGGGAAAATGGTTCTGCAGAAAATGTGATACAGGGTTACAAGTAATACGACGGGCGAAAAAGGTATTTGAGAGTAAAAGGCAGAGAAAAACAAGCGAAGATGGTTCAAAACCAGTTGATGGATTTGAAAAAAATTGGAACGATAAACATGGACGAGATTTGGATAAAGGTGGAGGAATGGACATGCTTTTAACTGCAGCCAATACTTTGAATTTGGAAGAGGACTTGGCTGCAATCCGGGCGTAG 1860 0.4151 METEDGTSNGDNTECSEAVQCLKGAAVNNGVADSNDVEKGAQRLDCEAVNNGVVIAGGNDVAQGDSAVVESFRTYKRRRHVKLNPESKAQEDCRTYSEAASRLAGQAVKKPCNVAVGNTLDKHSHAHWGNVVLMHLYQSLGDDKDGIEGCMREALMRYPKISCATTLKETCKIDKVGEDYSPRFELMSHRLRKEVNGHANVLCNGSCNESNSPDANEMCQRVLCNILVSEKFSSLCKVLIENFKGMKPESVFDFSIINSRLKEQAYEQSPTLFLSDIQQIWRKLQDTGNEIVSLAKGLSDMSRTFYCEQAGVSLHSTFKDGKQEESDSHMKPEQTEDCSMYKICTCRHCGNKANGKDCLVCDSCEEMFHISCIEPPVKEIPHKSWYCAKCTASGIGSPHENCVVCERLNDSRTLNFDENFPVNEETINELEENSNCTYDGAQASRRGEIDKICKVCKNEVDEGERIKVCGHSFCSDKYYHVRCLTSKQLTSYGPCWYCPSCLCQVCLTDKDDDQIVICDGCDDAYHIYCMKPARTSIPKGKWFCRKCDTGLQVIRRAKKVFESKRQRKTSEDGSKPVDGFEKNWNDKHGRDLDKGGGMDMLLTAANTLNLEEDLAAIRA 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci15g0412 619 ProSiteProfiles Zinc finger PHD-type profile. 500 550 IPR019787 -
Prci15g0412 619 MobiDBLite consensus disorder prediction 564 590 - -
Prci15g0412 619 PANTHER OS02G0192300 PROTEIN 252 409 - -
Prci15g0412 619 SMART PHD_3 345 391 IPR001965 -
Prci15g0412 619 SMART PHD_3 452 502 IPR001965 -
Prci15g0412 619 SMART PHD_3 505 548 IPR001965 -
Prci15g0412 619 Gene3D - 235 393 - -
Prci15g0412 619 FunFam PHD finger protein EHD3 isoform A 237 394 - -
Prci15g0412 619 Pfam PHD-finger 503 548 IPR019787 -
Prci15g0412 619 Pfam PHD-finger 346 392 IPR019787 -
Prci15g0412 619 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 447 553 IPR013083 -
Prci15g0412 619 ProSiteProfiles Zinc finger PHD-type profile. 343 393 IPR019787 -
Prci15g0412 619 SUPERFAMILY FYVE/PHD zinc finger 334 391 IPR011011 -
Prci15g0412 619 ProSiteProfiles Zinc finger RING-type profile. 453 501 IPR001841 -
Prci15g0412 619 SUPERFAMILY FYVE/PHD zinc finger 502 555 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci15g0412 Prci-Chr15 2694009 2701502 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci15g0412 502 568 C2H2 Transcription Factor Family AT3G01460 40.299 1.08e-12 69.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Prci15g0412 PHD 4.4e-13 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci15g0412 - - gmx:100795906 800.045