Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci15g0409 ATGGCATCGTCATCGAATTCACCGTGTGCGGCTTGTAAGTTTCTGCGGCGAAAGTGCCAACCGGAGTGCGTGTTTGCACCCTACTTCCCGCCGGATCAGCCCCAGAAATTCGCTAATGTGCACAAAGTATTCGGAGCAAGTAATGTTACCAAGCTCCTTAACGAGTTACACCCCCACCAGCGTGAAGACGCCGTCAATTCTCTGGCCTACGAGGCCGACATGCGCCTCCGCGACCCCGTGTACGGCTGCGTGGGAGTGATCTCTCTCTTGCAACACCAACTCCGGCAGCTGCAAATGGACCTCACCTGCGCCAAGTCGGAGCTGTCCAGGTACCAGACCTTGGGCATCACTGGGCACAGCCTCATTGCGGCCCACCATCAGGCTCAGAACATGGGCATGAACTTGATCGGCGACCACCACTACCACCACCACCAGTTCTTTCCTCGGGACCACCATCAGACCCCCATGATTAGGACCTTTGACGCGGCTAACGGCTATGACGCTGGTCTCTTGTCCATGAACGTCTCCGCAAGTATAGGGCAGCTTAATCAGTTTCAGCACCAGCACCCTAGAGCTGCTACTGGGGACGATCGTCGGACCATTGATCCCTCTTAG 615 0.5642 MASSSNSPCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPHQREDAVNSLAYEADMRLRDPVYGCVGVISLLQHQLRQLQMDLTCAKSELSRYQTLGITGHSLIAAHHQAQNMGMNLIGDHHYHHHQFFPRDHHQTPMIRTFDAANGYDAGLLSMNVSASIGQLNQFQHQHPRAATGDDRRTIDPS 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci15g0409 204 Pfam Lateral organ boundaries (LOB) domain 8 105 IPR004883 -
Prci15g0409 204 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 5 146 - -
Prci15g0409 204 ProSiteProfiles LOB domain profile. 7 108 IPR004883 -
Prci15g0409 204 Coils Coil 87 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci15g0409 Prci-Chr15 2644395 2646238 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci15g0409 2 204 AS2 family AT1G65620 70.370 3.32e-91 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Prci15g0409 LOB 2.7e-43 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci15g0409 - - jre:109004073 352.058