Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci15g0382 ATGGAGGATTCTTCTTCATCTGCGGTCGAGGATGCCAAGACTAGTTGCCCTCGCGGTCACTGGAGACCCTCCGAGGATGAGAAGCTCCGGCTGCTCGTTCAACAATATGGTGCCCAGAACTGGAATTCAATCGCCGAGAAGCTCCAAGGAAGATCAGGGAAAAGTTGCAGATTAAGGTGGTTTAATCAGCTTGATCCTAGGATTAACAGAAGGCCGTTTACAGAAGCGGAAGAAGAGAGGCTACTTGCAGCTCATCGAATCCATGGGAATAAGTGGGCACTCATAGCAAGGCTTTTTCCAGGTCGTACTGATAACGCTGTGAAGAATCATTGGCATGTTATAATGGCGCGCAAGCAAAGAGAACAATCTAAGTTATGCGGGAAGAGAAGCTTCCAAGATGTTTATAACTATAATGATTCTAATTACAGTTGTCCCAAGAAAATCTCATCAAACCCTTATCAAGACGTGTTAATTAGCTCCAGAATGAATGGGTTAGAGAATGCCAGATTCTTTGATTTCCGTAACTTTAAACATAAAGATAGAATATTTGCCGATTCTCCCTCCACTTCTTTGGCTTCTTGGAGTTTTGCTACCTCATCATCAAACGGTTCTCCTGCTGCGGATTCATTTAGAAGAGATGGCAGAGATTTCTTCAATTCTCACTCCAACAACCAATACGTTGTATCAGAAATATCGAAAGGTTCAGATAGGTTTCATTACAGAATTTATCCGAATTCTTCAGCAAATTCCAGGAGAGCCGTTCCATCAAATGCTTTTGGACTTTTTGGTTCCAACGAAGATGGAAGGACAAAGAGGGACTTCCCCAGTTTCTGTGATAGCTCGACATTCACCAAGGTACGGGCTTCTACGGATCGGCGAGAGCTAGAAGATCCCGAACCTATTGAACACAAAGAAGTTCCTTTTATTGATTTTCTTGGTGTCGGCGTCTCTTCGTCATAA 960 0.4344 MEDSSSSAVEDAKTSCPRGHWRPSEDEKLRLLVQQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRRPFTEAEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMARKQREQSKLCGKRSFQDVYNYNDSNYSCPKKISSNPYQDVLISSRMNGLENARFFDFRNFKHKDRIFADSPSTSLASWSFATSSSNGSPAADSFRRDGRDFFNSHSNNQYVVSEISKGSDRFHYRIYPNSSANSRRAVPSNAFGLFGSNEDGRTKRDFPSFCDSSTFTKVRASTDRRELEDPEPIEHKEVPFIDFLGVGVSSS 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci15g0382 319 CDD SANT 72 112 IPR001005 -
Prci15g0382 319 FunFam MYB transcription factor 71 141 - -
Prci15g0382 319 PANTHER MYB PROTEIN-RELATED 18 187 - -
Prci15g0382 319 MobiDBLite consensus disorder prediction 1 22 - -
Prci15g0382 319 CDD SANT 21 62 IPR001005 -
Prci15g0382 319 Gene3D - 18 69 - -
Prci15g0382 319 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 13 64 IPR017930 -
Prci15g0382 319 Pfam Myb-like DNA-binding domain 21 81 - -
Prci15g0382 319 Gene3D - 72 132 - -
Prci15g0382 319 ProSiteProfiles Myb-like domain profile. 65 115 IPR001005 -
Prci15g0382 319 SMART sant 69 117 IPR001005 -
Prci15g0382 319 SMART sant 17 66 IPR001005 -
Prci15g0382 319 SUPERFAMILY Homeodomain-like 16 111 IPR009057 -
Prci15g0382 319 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 119 IPR017930 -
Prci15g0382 319 ProSiteProfiles Myb-like domain profile. 13 64 IPR001005 -
Prci15g0382 319 FunFam MYB transcription factor 18 69 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci15g0382 Prci-Chr15 2500869 2502613 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci15g0382 16 125 MYB Transcription Factor Family AT1G17950 81.818 7.19e-65 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Prci15g0382 Myb_DNA-bind_6 9.5e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci15g0382 K09422 - gmx:100817328 367.851
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci15g0382 15 2500869 2502613 Prci2g0348 2 2483331 2484862 CCT
Prci15g0382 15 2500869 2502613 Prci15g0382 15 2500869 2502613 ECH