Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci15g0377 ATGCCGTCATGGGTTTTCATTAGGAACAAACCTCTTATTCAAAAAGTGGTTATGCTCTATACACCAGGCCTGGATGCAGCTTTGTACTTGTCACAGTCTAAAATGCTGCCCTTTTTAAAAAAATTCTGTGGCAATCCGAAGGCAGTCTTAGCTCTTAGCTGTGTTTCAGATGGAATGCAGACAATAGATGCACTCCTTACGTGCAAGCTGAAAAGAAAGAGGGATGAAAGTAGTTCAGTTACAGAGAAATCAACCCTGATATCTCTGCAAGAAAAAAGCAGTGGTGGTACAGATAATATATCGTTTATGGAGCTTACAGAAGGCATTCCTTTCCCTGTTACATACTATACACTTACTGAGAAGGAATTTGAAGACAATGGATATTCATTTAAACAGCCAGGTTTTCTTGCTACTTTGCCTGCTCCTTTGGGATCTTCTCCCTATGAAATGCTGGCGCTTGATTGTGAGATGTGCATCACAAGTGAGGGCTTTGAACTTACAAGAATTACTCTAGTGGATTTTAAAGGACAGGTCGTGCTTGATAAATTGGTTAAACCATCAAACGCTATCATTGATTACAATACCAGGTTTAGTGGTATAACACCTGAGATGTTAAATGGGGTCACAACAAATCTGAAAGACATTCAGGATGAATTTCTAAAGCTGGTTTACCAAGAGACTATTCTGGTTGGGCATTCTTTAGAAAATGATTTGTTAGCTCTGAAGATCTCTCATGATTTGGTAATTGACACGGCAGTATTATACAAACACTGCCGAGGGTCATCTCATAAAACTGCTCTGCGGATTCTTGCCAAGAAATTTCTCTCTCGGGAAATACAGCAATCAGGGAATGGACATGACAGCATTGAAGATGCTAGAGCTGCATTGGAATTGGCACTATTGAAGATCAGACATGGACCTGACTTTGGTTCTCCCCCATCCTTCATGCGGAAAAAGCTCTCTTCCATTTTGAGCGAGTCTAAAAAAACTTCCTCTTTAGTTGATAATATATCTACAGTAAAACGATATGCTTCTGAGTCGTCCAATGCGATTCCAGTGACTTCTGATGATGAAGCGCTTGCAAGGACCACCAAGGAGGTGAAAAATGACAAGGTACATTTTATCTGGACACAGTTTTCAGAATTACATTCATACTTGAAGAAGCAAGCTGAGGATTCAGAGATCTTGAATAAAAGACTTGCTGAGATGATGTCACTGCTTACTTGTAAGAAGAATTCTGCTAAAGGTAAAGACATCAAGCTGAGAGCAACTACTGAATTGAAGGAAATTCTAGGTCGCATGGATGCTAGAATTGAAACTCTATATAAGTCGTTACCGTCTAATGCTATGCTGATAATTTGCACCGGTCATGGAGACACAGCAATTGTGCACAGACTCAGGAGAATGCTTGCCGAGCAGGGCGAAACCACGATATGTCGTGAGAAGATTGTGGAAATCCTAGAAGAGGTTCAGGCTCGAGCGGAGGTAGCCTTGTGTTTTTTAGGTGTGAAGCATTGA 1518 0.4078 MPSWVFIRNKPLIQKVVMLYTPGLDAALYLSQSKMLPFLKKFCGNPKAVLALSCVSDGMQTIDALLTCKLKRKRDESSSVTEKSTLISLQEKSSGGTDNISFMELTEGIPFPVTYYTLTEKEFEDNGYSFKQPGFLATLPAPLGSSPYEMLALDCEMCITSEGFELTRITLVDFKGQVVLDKLVKPSNAIIDYNTRFSGITPEMLNGVTTNLKDIQDEFLKLVYQETILVGHSLENDLLALKISHDLVIDTAVLYKHCRGSSHKTALRILAKKFLSREIQQSGNGHDSIEDARAALELALLKIRHGPDFGSPPSFMRKKLSSILSESKKTSSLVDNISTVKRYASESSNAIPVTSDDEALARTTKEVKNDKVHFIWTQFSELHSYLKKQAEDSEILNKRLAEMMSLLTCKKNSAKGKDIKLRATTELKEILGRMDARIETLYKSLPSNAMLIICTGHGDTAIVHRLRRMLAEQGETTICREKIVEILEEVQARAEVALCFLGVKH 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci15g0377 505 FunFam RNA exonuclease NEF-sp 146 310 - -
Prci15g0377 505 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 1 323 IPR047021 GO:0004527
Prci15g0377 505 CDD REX1_like 151 291 IPR034922 -
Prci15g0377 505 Gene3D - 147 308 IPR036397 GO:0003676
Prci15g0377 505 SMART exoiiiendus 149 308 IPR013520 -
Prci15g0377 505 SUPERFAMILY Ribonuclease H-like 150 302 IPR012337 -
Prci15g0377 505 Pfam Exonuclease 152 298 IPR013520 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci15g0377 Prci-Chr15 2482013 2488550 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci15g0377 150 298 C2H2 Transcription Factor Family AT3G27970 26.347 3.27e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci15g0377 K14570 - qsa:O6P43_019835 790.801