Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci15g0337 ATGGTGAAAAGCATCCTATGCAAATACACAGTGCATCACAGCTTTACCAAGAAGCTCGCGAGGCACAAAGGCTCTGATTTAAACAATCCGACAGAGCCGCGAGTCGTACGGATATCCGTAACTGATCCGGATGCCACGGACTCCTCCAGCGACGAGGAAGGAGAGTTTGGTGGTCGACCCAGAGTCAAGCGGTATGTGAACCAGATTGACATCGAGACTAGCGCGAAAAACGGGACCCTCCCGTACAATGCCCGGAAGAGGCTCGGCGGAAGCACGGCAACTTTAAGTCGGCCGGCGAAGGTTTCCACGACCAATAACGGCAGGAAGTTCCGAGGTGTACGGCAAAGACCTTGGGGGAAATGGGCGGCAGAGATCCGAGATCCAGCTAGACGAGTACGGCTGTGGTTGGGGACGTATGATACAGCAGAGGAGGCAGCCATGGTTTACGATAATGCGGCAATCAAGCTGCGAGGACCCGATGCTCTGACGAACTTTGCAACGCCACCGGCGAGGGACAAGGCCGAAGAAGTAGGAGCAGAAATGACAATGAAGCCGGAGATGAAAGTGTCAGTGCAGCCAGAAGCCTCCAGTTCGGGCTACGAATCGGGAGACGATTCTCATAATCTTTCATCGCCGACATCGGTGCTCCAGTTTAGAAGTAATACGAGCGAGGAAACAGAACCAGAAAAGGCGACGGCCTCATGCGGAGAAGAGGACGAAAGAGAAGAAAGAGGGGAAGAGCCATTCGGGGAGTGGGAAGGGGCGACGAACGAGAGGAGGTTGTGGGAGGAAGAGGAGAATTGGAGGATAGGGATGCCGGTATGGGATGACATGTTGAGGAACTTTGAAACGCCAGAATACTCGTCGGTGATGTGGGAAGAGCCATCGCCGTTATATTGGGAAACAACGAGGGTGATGGCGGAGGAGATTGGAGGAGGAGCGGGGGAGACAGATTGGGAGCTAGCGTGCTCGCCATCAGGGATGTGCCAGGTGGACGATTACTTTCAAGACATATTGTTAGGGTCAGATCCTCTGGTGGCGCTCTGA 1047 0.5425 MVKSILCKYTVHHSFTKKLARHKGSDLNNPTEPRVVRISVTDPDATDSSSDEEGEFGGRPRVKRYVNQIDIETSAKNGTLPYNARKRLGGSTATLSRPAKVSTTNNGRKFRGVRQRPWGKWAAEIRDPARRVRLWLGTYDTAEEAAMVYDNAAIKLRGPDALTNFATPPARDKAEEVGAEMTMKPEMKVSVQPEASSSGYESGDDSHNLSSPTSVLQFRSNTSEETEPEKATASCGEEDEREERGEEPFGEWEGATNERRLWEEEENWRIGMPVWDDMLRNFETPEYSSVMWEEPSPLYWETTRVMAEEIGGGAGETDWELACSPSGMCQVDDYFQDILLGSDPLVAL 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci15g0337 348 Gene3D AP2/ERF domain 108 167 IPR036955 GO:0003700|GO:0006355
Prci15g0337 348 CDD AP2 109 166 IPR001471 GO:0003700|GO:0006355
Prci15g0337 348 MobiDBLite consensus disorder prediction 95 110 - -
Prci15g0337 348 SMART rav1_2 109 172 IPR001471 GO:0003700|GO:0006355
Prci15g0337 348 PRINTS Ethylene responsive element binding protein signature 132 148 IPR001471 GO:0003700|GO:0006355
Prci15g0337 348 PRINTS Ethylene responsive element binding protein signature 110 121 IPR001471 GO:0003700|GO:0006355
Prci15g0337 348 MobiDBLite consensus disorder prediction 39 59 - -
Prci15g0337 348 ProSiteProfiles AP2/ERF domain profile. 109 166 IPR001471 GO:0003700|GO:0006355
Prci15g0337 348 MobiDBLite consensus disorder prediction 165 258 - -
Prci15g0337 348 FunFam Ethylene-responsive transcription factor 2 108 167 - -
Prci15g0337 348 Pfam AP2 domain 109 158 IPR001471 GO:0003700|GO:0006355
Prci15g0337 348 MobiDBLite consensus disorder prediction 223 239 - -
Prci15g0337 348 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 32 243 - -
Prci15g0337 348 SUPERFAMILY DNA-binding domain 109 166 IPR016177 GO:0003677
Prci15g0337 348 MobiDBLite consensus disorder prediction 89 111 - -
Prci15g0337 348 MobiDBLite consensus disorder prediction 191 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci15g0337 Prci-Chr15 2235618 2237514 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci15g0337 7 225 AP2-EREBP Transcription Factor Family AT4G27950 49.780 4.35e-57 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Prci15g0337 AP2 6.7e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci15g0337 - - pcin:129303306 378.637
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci15g0337 15 2235618 2237514 Prci15g0337 15 2235618 2237514 ECH