Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci15g0330 ATGGATGACAGTTTTTCTGATATTCTTGAAGACAAGGAATTTGGTGGAGATGACCTCTTTGCCATTTTGGAGAGACTTGAGGACTTCGCTGACTTTCCTCCCGTTGATGAAGCTGTTGTTAGCACTAAGGAGAAAGAGGAAACTTCAAGGTTCGTTTCACAAAAATCAACTTCAAGTGCTCTACAAGAATCTGAAGAAACTGAGCTTGAAGCTTCACCCAAAAGCAAGAGACAGAAGCTCGTACCGACCACTTCTTTGGAGGATCCAAACCCAGACGGCCAACAAAGGATATCTCACATCACTGTTGAGCGCAACCGAAGAAAGCAAATGAACGAGCACTTGTCCGTCTTAAGGTCACTTATGCCAAACTTCTATGTCAAACGTGGTGACCAAGCATCGATTATTGGAGGAGTGGTTGATTACATAAACGAGTTGCAGCTGATTCTACAGTCCCTAGAAGCCAAGAAGCAAAGAAAAGTATACAGTGAAGTGCTGAGCCCTAGGCTAGTCTCAAGTCCAAGGCCTTTAGCCCTTAGTCCTAGAAAGCCCCCTTTAAGCCCTAGGCTAAGCTTGCCCATTAGTCCGAGGACTCCACAACCAGGTAGTCCTTACAAGCCCAGGTTGCAGCAAGGTTACCTTTCTCCAACCATCTCCCACTCTCTCGAGCCATCTCCTACCTCTTCTGCTGCTTCTTCCTCCATTAACGATAACATCAACGAGCTTGTGGCCAACTCCAAGTCTGCTATGGCCGATGTGGAGGTCAAGTTTTCTGGGCCGCACGTTCTTTTGAAAACAGTGTCTCCGCCTATTCCAGGTCAAGCTTTGAAGATCATATCAGCGCTTGAAGACCTGTCTCTTGAAATCCTTCATGTCAGCATCAGCACTACTGATGAAACCATGCTAAACTCATTCACTATTAAGATTGGAATTGAATGCCAACTCAGTGCGGAAGAACTCGCTCTACAAATCCAGCAAACATTCTGCTGA 987 0.458 MDDSFSDILEDKEFGGDDLFAILERLEDFADFPPVDEAVVSTKEKEETSRFVSQKSTSSALQESEETELEASPKSKRQKLVPTTSLEDPNPDGQQRISHITVERNRRKQMNEHLSVLRSLMPNFYVKRGDQASIIGGVVDYINELQLILQSLEAKKQRKVYSEVLSPRLVSSPRPLALSPRKPPLSPRLSLPISPRTPQPGSPYKPRLQQGYLSPTISHSLEPSPTSSAASSSINDNINELVANSKSAMADVEVKFSGPHVLLKTVSPPIPGQALKIISALEDLSLEILHVSISTTDETMLNSFTIKIGIECQLSAEELALQIQQTFC 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci15g0330 328 Gene3D - 87 160 IPR036638 GO:0046983
Prci15g0330 328 PANTHER TRANSCRIPTION FACTOR FAMA 15 327 IPR044283 GO:0003700|GO:0010052
Prci15g0330 328 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 94 145 IPR011598 GO:0046983
Prci15g0330 328 MobiDBLite consensus disorder prediction 40 96 - -
Prci15g0330 328 MobiDBLite consensus disorder prediction 172 209 - -
Prci15g0330 328 MobiDBLite consensus disorder prediction 77 96 - -
Prci15g0330 328 MobiDBLite consensus disorder prediction 177 202 - -
Prci15g0330 328 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 93 166 IPR036638 GO:0046983
Prci15g0330 328 SMART finulus 100 151 IPR011598 GO:0046983
Prci15g0330 328 MobiDBLite consensus disorder prediction 52 66 - -
Prci15g0330 328 FunFam Transcription factor SPEECHLESS 86 160 - -
Prci15g0330 328 Pfam Helix-loop-helix DNA-binding domain 95 146 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci15g0330 Prci-Chr15 2160897 2163911 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci15g0330 1 308 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G53210 51.966 1.69e-89 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Prci15g0330 HLH 6e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci15g0330 K20558 - gmx:100777437 417.927
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci15g0330 15 2160897 2163911 Prci15g0330 15 2160897 2163911 ECH