Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci15g0269 ATGTCACTCCGACGAAGGACTCACGCGCTGAAACCGGCATCTAAGTTCCCTTTAATCCGTAAATCGTTCGATTACGATTATGTGTGCTGCGAAGAATGTGGATCCGGCCACTCGCCGGCCAAATTGATTCTTTGCGACAAATGTGATCGAGGATACCACCTGTTCTGCCTCAGACCCATACTCGTTTTTGTGCCCAAAGGGTCTTGGTTCTGCCCCTCTTGCTCTAAAAACAAGAAGCCAAAGTCTTTTCCTCTAGTTCAGACTAAAATTATTGATTTCTTTCGCATTCAGCGATCGCCGCAAGTTACTCAAGCATCCAGTCAAGATATCCGAAAGAAACGAAAGCGGGCTTCAAGCCTAGTGCTGTCGAAAAAGAAACGAAAGCTACTGCCATTCTGCCCAAGTGAAGATCCTTCAAGGAGATTAGAACAGATGGCATCTCTGGCAACGGCATTGACAGCAACTAATACAGACTTCAGCAATGATCTTACTTACGTGCCTGGAATGGCACCGAGATCAGCTAATCGCGCGGCTCTTGAAAAGGGTGGAATGCAGGTATTATCCAAAGAAGATACAGACACCTTGAACTTGTGCAAGAGTATGATGGAAAGAGGAGAATGGCCTCCACTTATGGTTGTTTTTGATCCTCAAGAAGGGTTCACTGTTGAGGCAGATAAATGGATAAGAGACTTAACAATAATCACAGAGTATGTAGGAGATGTTGACTATTTGAGGAACCGTGAAAATGATGACGGGGATAGCATGATGACACTTCTTTCCGCTTGTGATGCTCCACAAACGTTAGTAATCTGTCCGGACAAACGAAGTAACATCGCGCGGTTTATTAACGGCATTAACAATCACACACCGGAAGGAAAGAAAAAGCAGAACTTAAAATGCGTGAGGTACGACGTCAATGGGGAATGTCGGGTTCTATTAATCGCAAACAGAGACATATCAAAGGGGGAGAGATTGTACTATGACTACAACGGAAGCGAGCATGAATATCCAACGGAGCACTTCGTGTAA 1029 0.448 MSLRRRTHALKPASKFPLIRKSFDYDYVCCEECGSGHSPAKLILCDKCDRGYHLFCLRPILVFVPKGSWFCPSCSKNKKPKSFPLVQTKIIDFFRIQRSPQVTQASSQDIRKKRKRASSLVLSKKKRKLLPFCPSEDPSRRLEQMASLATALTATNTDFSNDLTYVPGMAPRSANRAALEKGGMQVLSKEDTDTLNLCKSMMERGEWPPLMVVFDPQEGFTVEADKWIRDLTIITEYVGDVDYLRNRENDDGDSMMTLLSACDAPQTLVICPDKRSNIARFINGINNHTPEGKKKQNLKCVRYDVNGECRVLLIANRDISKGERLYYDYNGSEHEYPTEHFV 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci15g0269 342 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 85 IPR013083 -
Prci15g0269 342 ProSiteProfiles Zinc finger PHD-type profile. 27 77 IPR019787 -
Prci15g0269 342 FunFam Histone-lysine N-methyltransferase ATXR5 113 342 - -
Prci15g0269 342 SUPERFAMILY SET domain 200 332 IPR046341 -
Prci15g0269 342 CDD SET_ATXR5_6-like 205 342 - -
Prci15g0269 342 Gene3D SET domain 114 342 IPR046341 -
Prci15g0269 342 ProSitePatterns Zinc finger PHD-type signature. 30 74 IPR019786 -
Prci15g0269 342 SMART PHD_3 29 75 IPR001965 -
Prci15g0269 342 ProSiteProfiles SET domain profile. 208 330 IPR001214 GO:0005515
Prci15g0269 342 CDD PHD_RSF1 30 74 - -
Prci15g0269 342 Pfam PHD-finger 30 76 IPR019787 -
Prci15g0269 342 PANTHER N-LYSINE METHYLTRANSFERASE KMT5A 104 340 - -
Prci15g0269 342 SUPERFAMILY FYVE/PHD zinc finger 23 81 IPR011011 -
Prci15g0269 342 Pfam SET domain 245 330 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci15g0269 Prci-Chr15 1787724 1790084 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci15g0269 25 91 C2H2 Transcription Factor Family AT3G01460 37.313 5.70e-11 62.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Prci15g0269 SET 9.6e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci15g0269 K24406 - cave:132167302 530.02