Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci15g0251 ATGATGACGAGTGGTGAGTATACTCAAGCATCAGAGGAACATAACATTGGAAGCTTCACCGGCTCAAAGCCACCTGAGATTCCGAGAAAGAAGAACAAGATAGAAAATGGGAGGAGGTTTAGTGATGAACAAATCCGATCACTTGAATGCATATTTGAATCAGAGTCAAAGCTTGAGCCAAGAAAGAAGATGCAACTAGCAAGAGATCTTGGGTTGCAGCCACGCCAGGTTGCCATATGGTTCCAAAACAGAAGAGCCAGATGGAAATCAAAACGGATAGAGCAAGAATACAGGAAACTCAGAGATGAGTATGACAATTTATCATCTCTGTTTGAGTCCATAAAGAAAGAGAAGGAATCCTTGCAAGCTGAGGTGCAAAAGCTAAGAGATTTATCGGAGACATGTAATGGTGATTGTAAAAGGGAAAACAAGGTTGGCATGGAGAACAGCACAGAGGATGGTGCTTCAGGCAGCGGACAAAGCAACTGGATGTCTGAAGCAAAGCCAAATTTCTCAAATGAAAGGTCAGAGGATGCCAAGAATTATGATATAAGAGAATTGGCATCGATTGAAAAATGGTATAATGTTGATCCAAGTGGTCTCTTGGATCAGTCTTGCAGCAGTTCTCAGTGGTTAGATTTCTGGAATTGA 651 0.4178 MMTSGEYTQASEEHNIGSFTGSKPPEIPRKKNKIENGRRFSDEQIRSLECIFESESKLEPRKKMQLARDLGLQPRQVAIWFQNRRARWKSKRIEQEYRKLRDEYDNLSSLFESIKKEKESLQAEVQKLRDLSETCNGDCKRENKVGMENSTEDGASGSGQSNWMSEAKPNFSNERSEDAKNYDIRELASIEKWYNVDPSGLLDQSCSSSQWLDFWN 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci15g0251 216 SMART HOX_1 34 95 IPR001356 GO:0003677
Prci15g0251 216 FunFam Homeobox-leucine zipper protein ATHB-7 20 91 - -
Prci15g0251 216 Coils Coil 83 134 - -
Prci15g0251 216 MobiDBLite consensus disorder prediction 140 178 - -
Prci15g0251 216 ProSiteProfiles 'Homeobox' domain profile. 31 91 IPR001356 GO:0003677
Prci15g0251 216 MobiDBLite consensus disorder prediction 149 170 - -
Prci15g0251 216 Pfam Homeodomain 39 89 IPR001356 GO:0003677
Prci15g0251 216 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 29 168 IPR045224 GO:0003700
Prci15g0251 216 MobiDBLite consensus disorder prediction 1 38 - -
Prci15g0251 216 Gene3D - 35 96 - -
Prci15g0251 216 PRINTS Lambda-repressor HTH signature 71 87 IPR000047 GO:0003677
Prci15g0251 216 PRINTS Lambda-repressor HTH signature 62 71 IPR000047 GO:0003677
Prci15g0251 216 MobiDBLite consensus disorder prediction 1 18 - -
Prci15g0251 216 SUPERFAMILY Homeodomain-like 23 91 IPR009057 -
Prci15g0251 216 CDD homeodomain 38 92 IPR001356 GO:0003677
Prci15g0251 216 Pfam Homeobox associated leucine zipper 91 131 IPR003106 GO:0006355|GO:0043565
Prci15g0251 216 ProSitePatterns 'Homeobox' domain signature. 66 89 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci15g0251 Prci-Chr15 1670135 1671369 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci15g0251 1 215 Homeobox Transcription Factor Family AT2G46680 39.474 5.04e-42 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Prci15g0251 Homeodomain 1.9e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci15g0251 K09338 - gmx:100499926 282.722