Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci15g0239 ATGGCGAGTCCAAACAGAGCCAGACAAGTTGGTGACACGACCTATACCAAGATCTTCGTTGGGGGATTGGCTTGGGAGACCAAAAGAGACGCTCTGAAACACTATTTTGGGCAGTTCGGAGAGATATTAGAGGCTGTTGTTATAAACGACAGAAGCAGTGGAAAATCAAAAGGCTATGGCTTTGTAATCTGGCTCTTCTACCCTTTCTTGGCATATTGTCCAAGTCTTCTCTCCCTTGCTTCATTCACGCTCTTTTATTGTTTGTTTCAGGTGACATTCAAGAGCCCAGATTCTGCAACGAGAGCTTGTCAGAATCCCTATCCTACGATTGATGGGAGGAGAGCTAATTGTAATCTTGCAGCTCATGGTGCCCAAAGATTCAATCCATATGCAACAGTTGCAGGAAGGGAGAAATTTAGTACAACTTATTGGCCTACTGTTTCAGTTCCATTTCAAGGAATCTCCTCTTATTACAATCAGCACATACCCCAGCATGCAATTCCTTATCCTCCGTTCAGGTATCCAGGATACCCACCCACACAAGAAATTTACGCGATGAACTATTATAATCACTATGGAGGACAGCAGATTCCAATTCGTTGGCCTTCAGCGCATTACCAGCCGTTTTATGGCGTCGAACAGTTCGTTCCACCAACTTGTTTGAAAAAGGGGCAATACCCTGATCCTCCATCTCAGGAACTGTTCACAGCCGCGGGCTTATCACAGCCTATCTCAGCTTCTCCTTCAATACCCACCACAGGATTGGTCCCAGGAACGGGAGGAGCAGAAATCTTGTGCTGA 801 0.4569 MASPNRARQVGDTTYTKIFVGGLAWETKRDALKHYFGQFGEILEAVVINDRSSGKSKGYGFVIWLFYPFLAYCPSLLSLASFTLFYCLFQVTFKSPDSATRACQNPYPTIDGRRANCNLAAHGAQRFNPYATVAGREKFSTTYWPTVSVPFQGISSYYNQHIPQHAIPYPPFRYPGYPPTQEIYAMNYYNHYGGQQIPIRWPSAHYQPFYGVEQFVPPTCLKKGQYPDPPSQELFTAAGLSQPISASPSIPTTGLVPGTGGAEILC 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci15g0239 266 SUPERFAMILY RNA-binding domain, RBD 8 62 IPR035979 GO:0003676
Prci15g0239 266 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 62 IPR000504 GO:0003723
Prci15g0239 266 PANTHER BOULE-RELATED 91 231 - -
Prci15g0239 266 Gene3D - 1 132 IPR012677 -
Prci15g0239 266 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 62 IPR000504 GO:0003723
Prci15g0239 266 SMART rrm1_1 17 118 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci15g0239 Prci-Chr15 1590168 1592002 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci15g0239 12 121 C2H2 Transcription Factor Family AT2G19380 30.000 6.13e-09 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci15g0239 - - pcin:129294759 558.91