Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci15g0235 ATGGCGAGTCCAAACAGAGCCAGACAAGTTGGTGACACGACCTATACCAAGATCTTCGTTGGGGGATTGGCTTGGGAGACCAAAAGAGACGCTCTGAAACACTATTTTGGGCAGTTCGGAGAGATATTAGAGGCTGTTGTTATAAACGACAGAAGCAGTGGAAAATCAAAAGGCTATGGCTTTGTGACATTCAAGAGCCCAGATTCTGCAACGAGAGCTTGTCAGAATCCCTATCCTACGATTGATGGGAGGAGAGCTAATTGTAATCTTGCAGCTCATGGTGCCCAAAGATTCAATCCATATGCAACAGGAAGGGAGAAATTTAGTACAACTTATTGGCCTACTGTTTCAGTTCCATTTCAAGGAATCTCCTCTTATTACAATCAGCACATACCCCAGCATGCAATTCCTTATCCTCCGTTCAGGTATCCAGGATACCCACCCACACAAGAAATTTACGCGATGAACTATTATAATCACTATGGAGGACAGCAGATTCCAATTCGTTGGCCTTCAGCGCATTACCAGCCGTTTTATGGCGTCGAACAGTTCGTTCCACCAACTTGTTTGAAAAAGGGGCAATACCCTGATCCTCCATCTCAGGAACTGTTCACAGCCGCGGGCTTATCACAGCCTATCTCAGCTTCTCCTTCAATACCCACCACAGGATTGGTCCCAGGAACGGGAGGAGCAGAAATCTTGTGCTGA 708 0.4619 MASPNRARQVGDTTYTKIFVGGLAWETKRDALKHYFGQFGEILEAVVINDRSSGKSKGYGFVTFKSPDSATRACQNPYPTIDGRRANCNLAAHGAQRFNPYATGREKFSTTYWPTVSVPFQGISSYYNQHIPQHAIPYPPFRYPGYPPTQEIYAMNYYNHYGGQQIPIRWPSAHYQPFYGVEQFVPPTCLKKGQYPDPPSQELFTAAGLSQPISASPSIPTTGLVPGTGGAEILC 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci15g0235 235 SMART rrm1_1 17 89 IPR000504 GO:0003723
Prci15g0235 235 Gene3D - 1 106 IPR012677 -
Prci15g0235 235 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 93 IPR000504 GO:0003723
Prci15g0235 235 PANTHER BOULE-RELATED 7 200 - -
Prci15g0235 235 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 76 IPR000504 GO:0003723
Prci15g0235 235 CDD RRM_RBM24_RBM38_like 16 91 - -
Prci15g0235 235 SUPERFAMILY RNA-binding domain, RBD 8 101 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci15g0235 Prci-Chr15 1590168 1592002 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci15g0235 12 92 C2H2 Transcription Factor Family AT2G19380 40.741 5.01e-14 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci15g0235 - - pcin:129294759 473.781