Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci15g0234 ATGGCGGTGGCTGAGAATGCCGGAGCCATAATCGGCTCATCCAGTCAGAATTTAGATAACAGTGTAGTATCATCGGACTCAACTGTGACAAATGAGCTGCAGAAACCGAAACCCAGGACTGGGGCTATTGTAAATGGTTTAGAAACAGATGTTCAACCTGTTAACGGCGATCAGAACCTGAATGATGTGTTCGGCCATCAGGATAGAGCTCCGTCGGGCCCTAACGGCAACTACAGGTCTCAAATCACTCAGATGCGAAATGGGTTCGAGGCAAATGGGGTTCAGAACCAGCAGATGGTGCTAAATAATAGCGGATACGGAATACAGCAAATGTCTAACGGCGTAAGGAACGGTGAAGATGGTGGTGAGAGTTTCAAGCGTGATATGAGGGATTTGGAAGAGTTGTTGTCGAAGTTGAATCCCATGGCCGAGGAATTCGTACCACCATCGCTCACCAATAATCACGGATTCTTAGGTGGAGCTGGGTTTAGCTACCCTAACAACTTTCTAGCCCTCACTAACTATGGCAATGCTAATGGACATGCTAACAGAAGGAGGAAGAATGGATATAATCAAGGGAAGCGAAGAGCTAATAATAAAATGGATGTGGAGAAGAGAGAAGAGATGATTAAGAAGACTGTTTACGTGTCTGACATTGATCAACAGGTCACTGAAGAGCAGCTGGCAGCTCTCTTTCTTAACTGTGGACAGGTTGTTGATTGCCGAGTATGCGGAGATCCTAATTCTGTACTTCGTTTTGCCTTCATTGAGTTTACAGATGAAGAAGGTGCGAGGGCTGCTCTTAACCTGTCTGGCACTATGCTTGGATATTACCCAGTGAGAGTGCTGCCTTCAAAAACTGCCATCGCACCAGTTAACCCCTCATTTTTGCCCCGGTCTGAAGATGAAAGGGAGATGTGCTCAAGAACAATTTATTGCACAAATATTGACAAGAAGGTTACCCAGGCAGATGTTAAACTCTTCTTTGAATGTCTTTGTGGAGAGGTTCAGCGCTTGAGGCTTCTTGGAGATTACCATCACTCAACTCGAATTGCATTTGTTGAGTTCACCATGGCTGAAAGTGCAATTGCAGCTCTGAACTGTAGTGGTGTGATTTTGGGTTCGCTGCCTATCAGGGTAAGTCCGTCAAAGACACCTGTCCGGTCTCGTGCACCACGTGGGCCGATGCACTGA 1194 0.4631 MAVAENAGAIIGSSSQNLDNSVVSSDSTVTNELQKPKPRTGAIVNGLETDVQPVNGDQNLNDVFGHQDRAPSGPNGNYRSQITQMRNGFEANGVQNQQMVLNNSGYGIQQMSNGVRNGEDGGESFKRDMRDLEELLSKLNPMAEEFVPPSLTNNHGFLGGAGFSYPNNFLALTNYGNANGHANRRRKNGYNQGKRRANNKMDVEKREEMIKKTVYVSDIDQQVTEEQLAALFLNCGQVVDCRVCGDPNSVLRFAFIEFTDEEGARAALNLSGTMLGYYPVRVLPSKTAIAPVNPSFLPRSEDEREMCSRTIYCTNIDKKVTQADVKLFFECLCGEVQRLRLLGDYHHSTRIAFVEFTMAESAIAALNCSGVILGSLPIRVSPSKTPVRSRAPRGPMH 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci15g0234 397 MobiDBLite consensus disorder prediction 15 35 - -
Prci15g0234 397 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 212 287 IPR000504 GO:0003723
Prci15g0234 397 CDD RRM2_CID8_like 305 386 IPR034825 -
Prci15g0234 397 Gene3D - 174 289 IPR012677 -
Prci15g0234 397 Gene3D - 295 391 IPR012677 -
Prci15g0234 397 CDD RRM1_CID8_like 210 289 IPR034823 -
Prci15g0234 397 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 134 390 - -
Prci15g0234 397 FunFam Polyadenylate-binding protein-interacting protein 11 175 289 - -
Prci15g0234 397 SUPERFAMILY RNA-binding domain, RBD 298 392 IPR035979 GO:0003676
Prci15g0234 397 SMART rrm1_1 213 283 IPR000504 GO:0003723
Prci15g0234 397 SMART rrm1_1 310 381 IPR000504 GO:0003723
Prci15g0234 397 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 311 378 IPR000504 GO:0003723
Prci15g0234 397 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 214 276 IPR000504 GO:0003723
Prci15g0234 397 SUPERFAMILY RNA-binding domain, RBD 186 288 IPR035979 GO:0003676
Prci15g0234 397 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 309 385 IPR000504 GO:0003723
Prci15g0234 397 MobiDBLite consensus disorder prediction 15 41 - -
Prci15g0234 397 MobiDBLite consensus disorder prediction 180 202 - -
Prci15g0234 397 FunFam Polyadenylate-binding protein-interacting protein 10 303 381 - -
Prci15g0234 397 Pfam Ataxin-2 C-terminal region 136 150 IPR009818 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci15g0234 Prci-Chr15 1581672 1587615 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci15g0234 214 380 Eukaryotic Initiation Factors Gene Family AT1G34140 25.731 1.75e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci15g0234 - - pcin:129303146 649.818
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci15g0234 15 1581672 1587615 Prci15g0234 15 1581672 1587615 ECH