Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci15g0224 ATGGATAACTCCACTCAAGAATCCCGCCTCAGATCCGAACACTCCATAACCTATGATTCCCCTTATCCTATCTACGCCATGGCCTTCTCTTCCACCCCTTCTCTTGCTTCTCCGCACCAACGAATCGCAGTAGGTAGCTTCCTTGAAGATTACAATAACCGCGTCGATATTATCTCCTTCAACGCTGATTCTCCTTCCCTTCGCCACCAGCCTTCCCTCTCTTTCGACCATCCCTACCCGCCTACTAAACTTATGTTCCACCCGAACGCCCACTCTTCTCTTCGAAAGTCCTCCTCCGACCTCCTCGCCACGTCCGGTGACTATCTTCGCCTCTGGGAGGTTCGGGAAAATTCCGTCGACACAATTTCACTCCTCAACAATAGCAAGACCAGCGAGTTCTGCGCCCCTTTGACCTCCTTCGATTGGAACGATATCGAACCCAAGAGAATCGGGACTTCCAGCATCGACACGACTTGTACGATTTGGGATATCGAAAAGGGCGTTGTCGAAACGCAGCTAATTGCTCACGATAAGGAGGTTTACGATATTGCTTGGGGCGAGGCTAGAGTGTTTGCGTCTGTTTCGGCCGATGGTTCTGTTAGAATCTTCGATCTAAGGGACAAGGAGCACTCCACGATCATATACGAGAGCCCGCAGCCAGATACGCCTCTGCTCAGGCTGGCTTGGAATAAGCAGGACCTGAGGTACATGGCCACGATACTGATGGATAGCAATAAGATTGTGATATTGGATATTAGATCACCGACCATGCCGGTGGCGGAGTTGGAGAGGCATCGTGCTTGTGTGAATGCCATTGCCTGGGCTCCCCAGAGTGGCAGGCATATCTGTTCGGCGGGGGATGATTCGCAGGCCCTTATTTGGGAATTGCCTACTGTGGCTGGACCTAATGGAATTGATCCCATGTCTATGTATTCTGCTGGCTCTGAAATTAATCAACTGCAATGGTCTGCTGCTCAGCCTGACTGGATTGCTATTGCTTTTGCGAACAAGATGCAGCTTTTGAAGGTTTGA 1032 0.5058 MDNSTQESRLRSEHSITYDSPYPIYAMAFSSTPSLASPHQRIAVGSFLEDYNNRVDIISFNADSPSLRHQPSLSFDHPYPPTKLMFHPNAHSSLRKSSSDLLATSGDYLRLWEVRENSVDTISLLNNSKTSEFCAPLTSFDWNDIEPKRIGTSSIDTTCTIWDIEKGVVETQLIAHDKEVYDIAWGEARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKIVILDIRSPTMPVAELERHRACVNAIAWAPQSGRHICSAGDDSQALIWELPTVAGPNGIDPMSMYSAGSEINQLQWSAAQPDWIAIAFANKMQLLKV 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci15g0224 343 ProSiteProfiles Trp-Asp (WD) repeats profile. 173 213 IPR001680 GO:0005515
Prci15g0224 343 SUPERFAMILY WD40 repeat-like 20 302 IPR036322 GO:0005515
Prci15g0224 343 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 262 296 - -
Prci15g0224 343 ProSitePatterns Trp-Asp (WD) repeats signature. 282 296 IPR019775 -
Prci15g0224 343 SMART WD40_4 68 113 IPR001680 GO:0005515
Prci15g0224 343 SMART WD40_4 121 163 IPR001680 GO:0005515
Prci15g0224 343 SMART WD40_4 166 204 IPR001680 GO:0005515
Prci15g0224 343 SMART WD40_4 255 295 IPR001680 GO:0005515
Prci15g0224 343 Pfam WD domain, G-beta repeat 173 204 IPR001680 GO:0005515
Prci15g0224 343 Gene3D - 2 340 IPR015943 GO:0005515
Prci15g0224 343 ProSiteProfiles Trp-Asp (WD) repeats profile. 262 296 IPR001680 GO:0005515
Prci15g0224 343 FunFam WD repeat-containing protein LWD1 11 342 - -
Prci15g0224 343 PANTHER WD REPEAT CONTAINING PROTEIN 5 343 IPR045159 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci15g0224 Prci-Chr15 1525937 1529309 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci15g0224 K11805 - tcc:18605867 602.053
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci2g0597 2 4364625 4366028 Prci15g0224 15 1525937 1529309 CCT
Prci15g0224 15 1525937 1529309 Prci15g0224 15 1525937 1529309 ECH