Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Prci15g0161 | ATGGGCAGACGAAAACAAAGTAGACCCCATCGATCTGGCGGGATAGTACTAGAAACACAGGCAACTGTTGCAACAGAATTGGATAAACAGAAAGTGCTGGAAACTGGGGGACAAGCGAGGGAGGATTTTGGTGAAGTTCACAATCCCTACTTTGTGGAAGTTGATAGGTCCGGTTGGTTCTCAAACGAACACCTTGATATTTCTGAAGTTGTTCTAACTGATTTGAAGATGAGAGAAGGTTTTTCGGGTTTTGAACTTTCCGATGACTTTTATCAGGATTTCCAACATTCTCTAAGATTTCAGGTGTTTAATGCCAATCAGATCCTTGGTCGAATTAAACTAGGCCATTGGCCTATATTGGCTTCTTCTGATATTCATCTAGAGTTTGTAAAAAGAGTAATGGATCATGGGGAAACATGTACGGTGCTGTTATCTGGGGTTTTTGATGGACCTGATGAAGGTGTCTCTGGTCTTATTCACTTGGCAAGTTTGAAATTTCTTACATTGAGGCCAGTTCTTGGGAGTAGATTTTCTGAAGACATGCCCTCCCTTAGATTAAGGGTTGAGATACTAAAGGGTGCCTTTGATGCATGTGAATCACTTCTAGACAGTTCCAGACAACTATGGAAGAAGAGTATGATGAATGTCATGTCTTGGCTACGCCCTGAAATTATGACGTCCGAGGTTAGATATGGGGTGGGTTGCTATATGAAAGTGGAAGTTGATCCACAGACTGAGATCAGGGATGATACTCGCTATACCCAGAAACATGTGAACTTTAACCCAGCAGGTTTCTATGAAGCCATTAGGCCTTCAAAATCAGAACCAATGCTTCAGGAAGACATACCTGACTTACTTCCTGAATTGAGACCATATCAAAGGCGTGCAGCTTTTTGGATGGTAGAGAGAGAGAAAAAAAGAGCTGGAGGTCAGGGGGAAAGAGAGAGAAGTCATTTTCATTCTCCTTTGTGTGTGCCCGTGGATTTTATTGACATGAGCTCTAAAATGTTCTTTAATCCATTCAGTGGAAATATTTCATTGTACCCAGAGACTCATGCACCTTGTGTGGTTGGAGGCATTCTTGCAGATGAAATGGGTTTGGGCAAAACTGTTGAACTACTTGCTTGCATCTTTGCTCATCAGAGATCAGCATCTGAAAGTGACATTCTTGTTGACTCAAAGGTGCAGGTTAATGAGGATCATAAGGTGAATTTTAAAAGACTCAAAAGAGATCGTGTGGAGTGTACATGTGGAGCTGTGAGTGAAAGTCTCAAATATAAGGGTCTATGGGTTCAGTGTGACATTTGTGATGCTTGGCAACATGCAGATTGTGTTGGTTATTCTCCCAAAGGAAAATCACTGAAATCAAAAGAGGGATCTGAAAGCAAGAAATTTAAAACCACCATAGCTGTAAGGGATGGGGATTATGTATGCCAAATATGCTCAGAACTAATACAAGCTACTGAATCTCCTATTGCTTCTGGTGCCACTCTTATTGTTTGTCCAGCTCCTATTTTGTCCCAGTGGCATGATGAAATTATCCGTCATACACGTCCAGGCTCCTTGAAAACGTATATTTATGAAGGTGTGCGAGACACATCTTTCACCAATACATCTATGATGAATATCAGTGAACTTGCTTCTGCGGACATTGTATTAACAACATACGATGTACTTAAAGAGGATCTGTCTCATGATTATGATAGGCATGAAGGTGATCGGCACTTTTTGAGATTTCAAAAAAGGTACCCAGTTGTCCCCACTCTTCTCACAAGAATATCCTGGTGGAGAATTTGCCTGGATGAGGCTCAAATGGTGGAGAGTAATGCTGCAGCTGCCACTGAAATGGCACTGCGGCTCAATGCAAAGTATCATTGGTGCATTACGGGAACCCCCATTCAGCGAAAGCTTGACGACTTGCATGGATTATTACGATTCCTTAAAGCTAGTCCTTTTGATATTTACCGTTGGTGGGCTGATGTTATTCGGGATCCTTATGAGAAGGGAGATATTGGAGCTATGGAATTTACACATAAAATGTTCAAACAAGTCATGTGGCGCTCTTCAAAAGAACATGTTGCAGATGAGTTGCAGCTTCCTTCTCAGGAGGAATGCCTCACTTGGCTCTCTCTCTCACCAGTAGAAGTGCACTTTTACCAAAGGCAACATGAAACTTGTGTTAACTATGTTCATGAAATTATTGACAGTTTGAGAAATGACATTCTTAATAGAAGTGTTCCAGGTTCTGTTTCTTCAGATGATTTTTCTGATTCCTTCATAACTCACACAGAGGCTGGGAAGTTATTGAATGCTCTGCTGAAGCTTCGTCAGGCTTGTTGTCACCCCCAGGTTGGAAGCTCTGGGTTGCGCTCTCTGCAACAGTCCCCGATGACCATGGAGGAAATACTGATGGTCCTTATAAGTAAGACTAAGATAGAAGGTGAGGAAGCTCTCAGGAGGTCAGTTGTTGCTTTAAATGGACTTGCTGCTATAAGCATAATGCAGAAGGATTTTTCTCAAGCAGCATTGCTGTACATTGAAGCACTGACTTTAGCCGAAGACCATTCTGAAGATTTCCGCCTAGATCCTTTGTTAAATATTCACATTCATTATAATCTGGCCGAAATACTTCCACTAACTACAAACATTTCACTTGAGCTCCCCTGCAAAGGAAGGCAGTTCTCTAGAACTTCACAACTTAAGTCAACGAAAAAGCATATTCTTGAAGAGGTTGATTGTTCTTTTGTTAAGAAGAAGAAAGGGAATGACTCTGATGATATATATTTCAAAATGGCTTCTGGAGAACCATTGAACAGTACACCTAGCTTTTCAGAAAATGACTTAAAGAGGCACCAGGAAGTTAATGATTCATCTACAAGTTCTTTACAGTTTTTGAAAGCAGAATGTGAAGATTTGAAACATAAATACTTATCTGTGTTCAGTTCAAAGCTATCTGCAGTCCAACAGGAGTTTCAGAAAGTGTATTTGCAGGTCTGCAATGCATATAGTGAGAGTACAAATGAGCCCACAATTTGGTGGTTAGAAGCACTTCATCATGCTGAACAGAACAAGGATTTTTCCGATGAGTTGCTTAGGAAGATTGAAGAAGCAATTGCAGGAACTTTGAACAATTCAAAGCCACCAAGAGTTACTGCTCGTTTCCGGAGCATACACTCTCTGAAGTATCAAATCCAGACAAGTTTGGATCAATTAGAAGCTTCTAGGAATGTGCTATTTGATCGAATTTTGGAAATTGATCAGACTATGGACAAACCAAAAGAAGAGGACATTGAACGTGATTATGAAGCAAGGCTCTTTGTTCTAAAGAATGAACGTGGAGGAATAATTTCATCTGCTGAGGAGGCAGTGGATCTGCAGAAGAAAAATTTTGCACTGAATCGTTTCCTTTCAAAGCTATCACAATCTAATCACATTTCAAAAACATCTGATATTGGCTATGAAGAATCAAGAAAAAGAAATGTTGGAGAAAGAGTTGTGGTTTCAAGATCAGCATCTCAATTGGAAGTTATTCTTGGTGTGTTAAAGACCTATTGCAAAGCTCGGTTGGGAAAGGATAGTGTTTCAACAGCCACCAAACATTTACATATTTTTGAGGGTATGCGAAAGGAGTTTGGCCATGCAAGGTCTTTGGCTTTAGCCCAAGCTCAATATCTGCGTGCCCATGATGAAATTAAGATGGCAGTTTCCCGGTTGCACCTAAAGGCAAATGAAAATGACAAGTCTCTTGATGCTTTAGGTGAAAATGAATTATGTGCAGCAAGTTCAAACTTTTCCCATGATAAGTTTTTGTCTTTGGCCTCATTGTCACAAGTAAAAGGAAAACTTCGCTACTTAAAGGGTTTGGTACAATTGAAACAACGGCCATTGGAGCATGCAGAAAGTTCTTCATTTACTCAGGTGGCTACTGCAATGTCAAATTTCACAGAAGAGAAATGCATGCCTGCATCTAAAGCTGATGAGGATTCATGCCCAGTTTGCCAAGAAAAGCTGGGCAGCCAGAAAATGGTTTTTCAGTGTGGGCATGTCACATGTTGTAAATGTTTATTTGCTATGACAGAGCAAAGGCTCCAAAATAGCAAGTTTCATAAATGGGTTATGTGTCCAACATGTCGACAGCACACTGATTTTGGTAACATTGCATATGCTGTTGATAGACAGCATGAATCTTTCAAAACTTCTGTGCTGCAGAATGTTGACAACAGTGAGAAATGTGAATCATCCATCAGCGTTAAAGGTTCCTACGGAACTAAGATTGAAGCAGTCACTAAAAGAATCTTGTGGATCAAGTCTACAGACCCTAAAGCAAAAGTCCTCGTGTTTTCTAGCTGGAATGATGTTCTTGATGTATTGGAACATGCTTTTGCTGTCAATAATATCACCTACATTCGGATGAAAGGAGGCAGAAAATCTCATGTTGCCATCAGTCAATTTAAAGGGCAGCAAAATGACGAAAGAGGAACATCCCAGGAATCGACATCAAAATTTATTCAGGTTTTATTAATTTTGATTCAACATGGAGCTAATGGCCTCAATCTTCTGGAAGCACAGCATGTGGTCCTTGTGGAGCCATTACTCAATCCTGCTGCTGAAGCACAAGCAATCAGTCGTGTGCATAGAATTGGGCAGAAAAATAAGACTCTCATTCATCGTTTCATTGTAAGTGGTAGTGAAGTATTCATAGCAAGCAATGGTATATGTAGAGGACTGAAATTCATCAGTGTCTGTCGATCAACTAATTCTCCGTACTCAATATCAGCTATTAACATCTTTAGAGGACTGAACATTGTCAGAGTAAGAAGTATAAGCTTCAAGCCTGTAGTCTACAATTGTATAAAGTTGCACCCCACCCCCAGCGGGCGGGCTGCGAAATTGCTTCAACACTTAATATTAGATATATTAGTTAGTGTAACTTAA | 4935 | 0.4041 | MGRRKQSRPHRSGGIVLETQATVATELDKQKVLETGGQAREDFGEVHNPYFVEVDRSGWFSNEHLDISEVVLTDLKMREGFSGFELSDDFYQDFQHSLRFQVFNANQILGRIKLGHWPILASSDIHLEFVKRVMDHGETCTVLLSGVFDGPDEGVSGLIHLASLKFLTLRPVLGSRFSEDMPSLRLRVEILKGAFDACESLLDSSRQLWKKSMMNVMSWLRPEIMTSEVRYGVGCYMKVEVDPQTEIRDDTRYTQKHVNFNPAGFYEAIRPSKSEPMLQEDIPDLLPELRPYQRRAAFWMVEREKKRAGGQGERERSHFHSPLCVPVDFIDMSSKMFFNPFSGNISLYPETHAPCVVGGILADEMGLGKTVELLACIFAHQRSASESDILVDSKVQVNEDHKVNFKRLKRDRVECTCGAVSESLKYKGLWVQCDICDAWQHADCVGYSPKGKSLKSKEGSESKKFKTTIAVRDGDYVCQICSELIQATESPIASGATLIVCPAPILSQWHDEIIRHTRPGSLKTYIYEGVRDTSFTNTSMMNISELASADIVLTTYDVLKEDLSHDYDRHEGDRHFLRFQKRYPVVPTLLTRISWWRICLDEAQMVESNAAAATEMALRLNAKYHWCITGTPIQRKLDDLHGLLRFLKASPFDIYRWWADVIRDPYEKGDIGAMEFTHKMFKQVMWRSSKEHVADELQLPSQEECLTWLSLSPVEVHFYQRQHETCVNYVHEIIDSLRNDILNRSVPGSVSSDDFSDSFITHTEAGKLLNALLKLRQACCHPQVGSSGLRSLQQSPMTMEEILMVLISKTKIEGEEALRRSVVALNGLAAISIMQKDFSQAALLYIEALTLAEDHSEDFRLDPLLNIHIHYNLAEILPLTTNISLELPCKGRQFSRTSQLKSTKKHILEEVDCSFVKKKKGNDSDDIYFKMASGEPLNSTPSFSENDLKRHQEVNDSSTSSLQFLKAECEDLKHKYLSVFSSKLSAVQQEFQKVYLQVCNAYSESTNEPTIWWLEALHHAEQNKDFSDELLRKIEEAIAGTLNNSKPPRVTARFRSIHSLKYQIQTSLDQLEASRNVLFDRILEIDQTMDKPKEEDIERDYEARLFVLKNERGGIISSAEEAVDLQKKNFALNRFLSKLSQSNHISKTSDIGYEESRKRNVGERVVVSRSASQLEVILGVLKTYCKARLGKDSVSTATKHLHIFEGMRKEFGHARSLALAQAQYLRAHDEIKMAVSRLHLKANENDKSLDALGENELCAASSNFSHDKFLSLASLSQVKGKLRYLKGLVQLKQRPLEHAESSSFTQVATAMSNFTEEKCMPASKADEDSCPVCQEKLGSQKMVFQCGHVTCCKCLFAMTEQRLQNSKFHKWVMCPTCRQHTDFGNIAYAVDRQHESFKTSVLQNVDNSEKCESSISVKGSYGTKIEAVTKRILWIKSTDPKAKVLVFSSWNDVLDVLEHAFAVNNITYIRMKGGRKSHVAISQFKGQQNDERGTSQESTSKFIQVLLILIQHGANGLNLLEAQHVVLVEPLLNPAAEAQAISRVHRIGQKNKTLIHRFIVSGSEVFIASNGICRGLKFISVCRSTNSPYSISAINIFRGLNIVRVRSISFKPVVYNCIKLHPTPSGRAAKLLQHLILDILVSVT | 1644 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Prci15g0161 | 1644 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE SHPRH FAMILY MEMBER | 1 | 1562 | - | - | |
Prci15g0161 | 1644 | SMART | ring_2 | 1330 | 1377 | IPR001841 | - | |
Prci15g0161 | 1644 | CDD | SF2_C_SNF | 1421 | 1559 | - | - | |
Prci15g0161 | 1644 | CDD | DEXQc_SHPRH | 289 | 688 | - | - | |
Prci15g0161 | 1644 | SUPERFAMILY | RING/U-box | 1316 | 1382 | - | - | |
Prci15g0161 | 1644 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 594 | 1564 | IPR027417 | - | |
Prci15g0161 | 1644 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 400 | 481 | IPR013083 | - | |
Prci15g0161 | 1644 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 487 | 650 | IPR014001 | - | |
Prci15g0161 | 1644 | CDD | PHD_TCF19_like | 417 | 481 | - | - | |
Prci15g0161 | 1644 | SUPERFAMILY | FYVE/PHD zinc finger | 411 | 483 | IPR011011 | - | |
Prci15g0161 | 1644 | ProSiteProfiles | Zinc finger RING-type profile. | 1330 | 1378 | IPR001841 | - | |
Prci15g0161 | 1644 | SMART | helicmild6 | 1455 | 1548 | IPR001650 | - | |
Prci15g0161 | 1644 | Pfam | SNF2-related domain | 292 | 784 | IPR000330 | GO:0005524|GO:0140658 | |
Prci15g0161 | 1644 | SMART | PHD_3 | 414 | 482 | IPR001965 | - | |
Prci15g0161 | 1644 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 272 | 685 | IPR027417 | - | |
Prci15g0161 | 1644 | ProSitePatterns | Zinc finger PHD-type signature. | 415 | 481 | IPR019786 | - | |
Prci15g0161 | 1644 | Gene3D | - | 1391 | 1564 | IPR027417 | - | |
Prci15g0161 | 1644 | SMART | ultradead3 | 285 | 657 | IPR014001 | - | |
Prci15g0161 | 1644 | Gene3D | - | 482 | 709 | IPR038718 | - | |
Prci15g0161 | 1644 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 1321 | 1390 | IPR013083 | - | |
Prci15g0161 | 1644 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 1427 | 1595 | IPR001650 | - | |
Prci15g0161 | 1644 | Pfam | Helicase conserved C-terminal domain | 1425 | 1548 | IPR001650 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Prci15g0161 | Prci-Chr15 | 1190241 | 1204869 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Prci15g0161 | 489 | 782 | RAD5 or RAD16-like Gene Family | AT5G22750 | 30.435 | 5.52e-36 | 147 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | SNF2 | Prci15g0161 | SNF2_N | 1.3e-85 | CL0023 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Prci15g0161 | K15710 | - | gmx:100776659 | 2381.67 |