Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci15g0158 ATGGGCAGACGAAAACAAAGTAGACCCCATCGATCTGGCGGGATAGTACTAGAAACACAGGCAACTGTTGCAACAGAATTGGATAAACAGAAAGTGCTGGAAACTGGGGGACAAGCGAGGGAGGATTTTGGTGAAGTTCACAATCCCTACTTTGTGGAAGTTGATAGGTCCGGTTGGTTCTCAAACGAACACCTTGATATTTCTGAAGTTGTTCTAACTGATTTGAAGATGAGAGAAGGTTTTTCGGGTTTTGAACTTTCCGATGACTTTTATCAGGATTTCCAACATTCTCTAAGATTTCAGGTGTTTAATGCCAATCAGATCCTTGGTCGAATTAAACTAGGCCATTGGCCTATATTGGCTTCTTCTGATATTCATCTAGAGTTTGTAAAAAGAGTAATGGATCATGGGGAAACATGTACGGTGCTGTTATCTGGGGTTTTTGATGGACCTGATGAAGGTGTCTCTGGTCTTATTCACTTGGCAAGTTTGAAATTTCTTACATTGAGGCCAGTTCTTGGGAGTAGATTTTCTGAAGACATGCCCTCCCTTAGATTAAGGGTTGAGATACTAAAGGGTGCCTTTGATGCATGTGAATCACTTCTAGACAGTTCCAGACAACTATGGAAGAAGAGTATGATGAATGTCATGTCTTGGCTACGCCCTGAAATTATGACGTCCGAGGTTAGATATGGGGTGGGTTGCTATATGAAAGTGGAAGTTGATCCACAGACTGAGATCAGGGATGATACTCGCTATACCCAGAAACATGTGAACTTTAACCCAGCAGGTTTCTATGAAGCCATTAGGCCTTCAAAATCAGAACCAATGCTTCAGGAAGACATACCTGACTTACTTCCTGAATTGAGACCATATCAAAGGCGTGCAGCTTTTTGGATGGTAGAGAGAGAGAAAAAAAGAGCTGGAGGTCAGGGGGAAAGAGAGAGAAGTCATTTTCATTCTCCTTTGTGTGTGCCCGTGGATTTTATTGACATGAGCTCTAAAATGTTCTTTAATCCATTCAGTGGAAATATTTCATTGTACCCAGAGACTCATGCACCTTGTGTGGTTGGAGGCATTCTTGCAGATGAAATGGGTTTGGGCAAAACTGTTGAACTACTTGCTTGCATCTTTGCTCATCAGAGATCAGCATCTGAAAGTGACATTCTTGTTGACTCAAAGGTGCAGGTTAATGAGGATCATAAGGTGAATTTTAAAAGACTCAAAAGAGATCGTGTGGAGTGTACATGTGGAGCTGTGAGTGAAAGTCTCAAATATAAGGGTCTATGGGTTCAGTGTGACATTTGTGATGCTTGGCAACATGCAGATTGTGTTGGTTATTCTCCCAAAGGAAAATCACTGAAATCAAAAGAGGGATCTGAAAGCAAGAAATTTAAAACCACCATAGCTGTAAGGGATGGGGATTATGTATGCCAAATATGCTCAGAACTAATACAAGCTACTGAATCTCCTATTGCTTCTGGTGCCACTCTTATTGTTTGTCCAGCTCCTATTTTGTCCCAGTGGCATGATGAAATTATCCGTCATACACGTCCAGGCTCCTTGAAAACGTATATTTATGAAGGTGTGCGAGACACATCTTTCACCAATACATCTATGATGAATATCAGTGAACTTGCTTCTGCGGACATTGTATTAACAACATACGATGTACTTAAAGAGGATCTGTCTCATGATTATGATAGGCATGAAGGTGATCGGCACTTTTTGAGATTTCAAAAAAGGTACCCAGTTGTCCCCACTCTTCTCACAAGAATATCCTGGTGGAGAATTTGCCTGGATGAGGCTCAAATGGTGGAGAGTAATGCTGCAGCTGCCACTGAAATGGCACTGCGGCTCAATGCAAAGTATCATTGGTGCATTACGGGAACCCCCATTCAGCGAAAGCTTGACGACTTGCATGGATTATTACGATTCCTTAAAGCTAGTCCTTTTGATATTTACCGTTGGTGGGCTGATGTTATTCGGGATCCTTATGAGAAGGGAGATATTGGAGCTATGGAATTTACACATAAAATGTTCAAACAAGTCATGTGGCGCTCTTCAAAAGAACATGTTGCAGATGAGTTGCAGCTTCCTTCTCAGGAGGAATGCCTCACTTGGCTCTCTCTCTCACCAGTAGAAGTGCACTTTTACCAAAGGCAACATGAAACTTGTGTTAACTATGTTCATGAAATTATTGACAGTTTGAGAAATGACATTCTTAATAGAAGTGTTCCAGGTTCTGTTTCTTCAGATGATTTTTCTGATTCCTTCATAACTCACACAGAGGCTGGGAAGTTATTGAATGCTCTGCTGAAGCTTCGTCAGGCTTGTTGTCACCCCCAGGTTGGAAGCTCTGGGTTGCGCTCTCTGCAACAGTCCCCGATGACCATGGAGGAAATACTGATGGTCCTTATAAGTAAGACTAAGATAGAAGGTGAGGAAGCTCTCAGGAGGTCAGTTGTTGCTTTAAATGGACTTGCTGCTATAAGCATAATGCAGAAGGATTTTTCTCAAGCAGCATTGCTGTACATTGAAGCACTGACTTTAGCCGAAGACCATTCTGAAGATTTCCGCCTAGATCCTTTGTTAAATATTCACATTCATTATAATCTGGCCGAAATACTTCCACTAACTACAAACATTTCACTTGAGCTCCCCTGCAAAGGAAGGCAGTTCTCTAGAACTTCACAACTTAAGTCAACGAAAAAGCATATTCTTGAAGAGGTTGATTGTTCTTTTGTTAAGAAGAAGAAAGGGAATGACTCTGATGATATATATTTCAAAATGGCTTCTGGAGAACCATTGAACAGTACACCTAGCTTTTCAGAAAATGACTTAAAGAGGCACCAGGAAGTTAATGATTCATCTACAAGTTCTTTACAGTTTTTGAAAGCAGAATGTGAAGATTTGAAACATAAATACTTATCTGTGTTCAGTTCAAAGCTATCTGCAGTCCAACAGGAGTTTCAGAAAGTGTATTTGCAGGTCTGCAATGCATATAGTGAGAGTACAAATGAGCCCACAATTTGGTGGTTAGAAGCACTTCATCATGCTGAACAGAACAAGGATTTTTCCGATGAGTTGCTTAGGAAGATTGAAGAAGCAATTGCAGGAACTTTGAACAATTCAAAGCCACCAAGAGTTACTGCTCGTTTCCGGAGCATACACTCTCTGAAGTATCAAATCCAGACAAGTTTGGATCAATTAGAAGCTTCTAGGAATGTGCTATTTGATCGAATTTTGGAAATTGATCAGACTATGGACAAACCAAAAGAAGAGGACATTGAACGTGTGGGTAAATGTCGAAATTGCCAACCTCATTCTGATGGTCCGCCATGCATTTTGTGTGAACTTGATGAATTGTTTCAGGATTATGAAGCAAGGCTCTTTGTTCTAAAGAATGAACGTGGAGGAATAATTTCATCTGCTGAGGAGGCAGTGGATCTGCAGAAGAAAAATTTTGCACTGAATCGTTTCCTTTCAAAGCTATCACAATCTAATCACATTTCAAAAACATCTGATATTGGCTATGAAGAATCAAGAAAAAGAAATGTTGGAGAAAGAGTTGTGGTTTCAAGATCAGCATCTCAATTGGAAGTTATTCTTGGTGTGTTAAAGACCTATTGCAAAGCTCGGTTGGGAAAGGATAGTGTTTCAACAGCCACCAAACATTTACATATTTTTGAGGGTATGCGAAAGGAGTTTGGCCATGCAAGGTCTTTGGCTTTAGCCCAAGCTCAATATCTGCGTGCCCATGATGAAATTAAGATGGCAGTTTCCCGGTTGCACCTAAAGGCAAATGAAAATGACAAGTCTCTTGATGCTTTAGGTGAAAATGAATTATGTGCAGCAAGTTCAAACTTTTCCCATGATAAGTTTTTGTCTTTGGCCTCATTGTCACAAGTAAAAGGAAAACTTCGCTACTTAAAGGGTTTGGTACAATTGAAACAACGGCCATTGGAGCATGCAGAAAGTTCTTCATTTACTCAGGTGGCTACTGCAATGTCAAATTTCACAGAAGAGAAATGCATGCCTGCATCTAAAGCTGATGAGGATTCATGCCCAGTTTGCCAAGAAAAGCTGGGCAGCCAGAAAATGGTTTTTCAGTGTGGGCATGTCACATGTTGTAAATGTTTATTTGCTATGACAGAGCAAAGGCTCCAAAATAGCAAGTTTCATAAATGGGTTATGTGTCCAACATGTCGACAGCACACTGATTTTGGTAACATTGCATATGCTGTTGATAGACAGCATGAATCTTTCAAAACTTCTGTGCTGCAGAATGTTGACAACAGTGAGAAATGTGAATCATCCATCAGCGTTAAAGGTTCCTACGGAACTAAGATTGAAGCAGTCACTAAAAGAATCTTGTGGATCAAGTCTACAGACCCTAAAGCAAAAGTCCTCGTGTTTTCTAGCTGGAATGATGTTCTTGATGTATTGGAACATGCTTTTGCTGTCAATAATATCACCTACATTCGGATGAAAGGAGGCAGAAAATCTCATGTTGCCATCAGTCAATTTAAAGGGCAGCAAAATGACGAAAGAGGAACATCCCAGGAATCGACATCAAAATTTATTCAGGTTTTATTAATTTTGATTCAACATGGAGCTAATGGCCTCAATCTTCTGGAAGCACAGCATGTGGTCCTTGTGGAGCCATTACTCAATCCTGCTGCTGAAGCACAAGCAATCAGTCGTGTGCATAGAATTGGGCAGAAAAATAAGACTCTCATTCATCGTTTCATTGTAAGTGGTAGTGAAGTATTCATAGCAAGCAATGGTATATGTAGAGGACTGAAATTCATCAGTGTCTGTCGATCAACTAATTCTCCGTACTCAATATCAGCTATTAACATCTTTAGAGGACTGAACATTGTCAGAGTAAGAAGTATAAGCTTCAAGCCTGTAGTCTACAATTGTATAAAGTTGCACCCCACCCCCAGCGGGCGGGCTGCGAAATTGCTTCAACACTTAATATTAGATATATTAGTTAGTGTAACTTAA 5013 0.4043 MGRRKQSRPHRSGGIVLETQATVATELDKQKVLETGGQAREDFGEVHNPYFVEVDRSGWFSNEHLDISEVVLTDLKMREGFSGFELSDDFYQDFQHSLRFQVFNANQILGRIKLGHWPILASSDIHLEFVKRVMDHGETCTVLLSGVFDGPDEGVSGLIHLASLKFLTLRPVLGSRFSEDMPSLRLRVEILKGAFDACESLLDSSRQLWKKSMMNVMSWLRPEIMTSEVRYGVGCYMKVEVDPQTEIRDDTRYTQKHVNFNPAGFYEAIRPSKSEPMLQEDIPDLLPELRPYQRRAAFWMVEREKKRAGGQGERERSHFHSPLCVPVDFIDMSSKMFFNPFSGNISLYPETHAPCVVGGILADEMGLGKTVELLACIFAHQRSASESDILVDSKVQVNEDHKVNFKRLKRDRVECTCGAVSESLKYKGLWVQCDICDAWQHADCVGYSPKGKSLKSKEGSESKKFKTTIAVRDGDYVCQICSELIQATESPIASGATLIVCPAPILSQWHDEIIRHTRPGSLKTYIYEGVRDTSFTNTSMMNISELASADIVLTTYDVLKEDLSHDYDRHEGDRHFLRFQKRYPVVPTLLTRISWWRICLDEAQMVESNAAAATEMALRLNAKYHWCITGTPIQRKLDDLHGLLRFLKASPFDIYRWWADVIRDPYEKGDIGAMEFTHKMFKQVMWRSSKEHVADELQLPSQEECLTWLSLSPVEVHFYQRQHETCVNYVHEIIDSLRNDILNRSVPGSVSSDDFSDSFITHTEAGKLLNALLKLRQACCHPQVGSSGLRSLQQSPMTMEEILMVLISKTKIEGEEALRRSVVALNGLAAISIMQKDFSQAALLYIEALTLAEDHSEDFRLDPLLNIHIHYNLAEILPLTTNISLELPCKGRQFSRTSQLKSTKKHILEEVDCSFVKKKKGNDSDDIYFKMASGEPLNSTPSFSENDLKRHQEVNDSSTSSLQFLKAECEDLKHKYLSVFSSKLSAVQQEFQKVYLQVCNAYSESTNEPTIWWLEALHHAEQNKDFSDELLRKIEEAIAGTLNNSKPPRVTARFRSIHSLKYQIQTSLDQLEASRNVLFDRILEIDQTMDKPKEEDIERVGKCRNCQPHSDGPPCILCELDELFQDYEARLFVLKNERGGIISSAEEAVDLQKKNFALNRFLSKLSQSNHISKTSDIGYEESRKRNVGERVVVSRSASQLEVILGVLKTYCKARLGKDSVSTATKHLHIFEGMRKEFGHARSLALAQAQYLRAHDEIKMAVSRLHLKANENDKSLDALGENELCAASSNFSHDKFLSLASLSQVKGKLRYLKGLVQLKQRPLEHAESSSFTQVATAMSNFTEEKCMPASKADEDSCPVCQEKLGSQKMVFQCGHVTCCKCLFAMTEQRLQNSKFHKWVMCPTCRQHTDFGNIAYAVDRQHESFKTSVLQNVDNSEKCESSISVKGSYGTKIEAVTKRILWIKSTDPKAKVLVFSSWNDVLDVLEHAFAVNNITYIRMKGGRKSHVAISQFKGQQNDERGTSQESTSKFIQVLLILIQHGANGLNLLEAQHVVLVEPLLNPAAEAQAISRVHRIGQKNKTLIHRFIVSGSEVFIASNGICRGLKFISVCRSTNSPYSISAINIFRGLNIVRVRSISFKPVVYNCIKLHPTPSGRAAKLLQHLILDILVSVT 1670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci15g0158 1670 SUPERFAMILY FYVE/PHD zinc finger 411 483 IPR011011 -
Prci15g0158 1670 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 594 1589 IPR027417 -
Prci15g0158 1670 Pfam SNF2-related domain 292 784 IPR000330 GO:0005524|GO:0140658
Prci15g0158 1670 CDD DEXQc_SHPRH 289 688 - -
Prci15g0158 1670 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 400 481 IPR013083 -
Prci15g0158 1670 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SHPRH FAMILY MEMBER 1 1588 - -
Prci15g0158 1670 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 487 650 IPR014001 -
Prci15g0158 1670 SUPERFAMILY RING/U-box 1342 1408 - -
Prci15g0158 1670 CDD PHD_TCF19_like 417 481 - -
Prci15g0158 1670 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 272 685 IPR027417 -
Prci15g0158 1670 Pfam Helicase conserved C-terminal domain 1451 1574 IPR001650 -
Prci15g0158 1670 ProSiteProfiles Zinc finger RING-type profile. 1356 1404 IPR001841 -
Prci15g0158 1670 Gene3D - 482 709 IPR038718 -
Prci15g0158 1670 SMART PHD_3 414 482 IPR001965 -
Prci15g0158 1670 CDD SF2_C_SNF 1447 1585 - -
Prci15g0158 1670 ProSitePatterns Zinc finger PHD-type signature. 415 481 IPR019786 -
Prci15g0158 1670 Gene3D - 1417 1590 IPR027417 -
Prci15g0158 1670 SMART helicmild6 1481 1574 IPR001650 -
Prci15g0158 1670 SMART ultradead3 285 657 IPR014001 -
Prci15g0158 1670 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1453 1621 IPR001650 -
Prci15g0158 1670 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1347 1416 IPR013083 -
Prci15g0158 1670 SMART ring_2 1356 1403 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci15g0158 Prci-Chr15 1190241 1204882 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci15g0158 489 782 RAD5 or RAD16-like Gene Family AT5G22750 30.435 6.22e-36 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Prci15g0158 SNF2_N 1.3e-85 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci15g0158 K15710 - gmx:100776659 2451.01