Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci15g0156 ATGGAGAAGGAACTGGTCGGATTGTATGACACGGTAAAGAAGGCGGCAGATTTGGCGAGCTCAACCGATAGCGAAGTTGAAGAAAGCCGATGTCTTGATGCGTTCGAGCAGCTTAAGAAATTTCCCGTCAATTATCAGATTCTGGTGTCCACCCAGGTGGGTAAACATCTAAAAGTTCTAACGAAGCATCCAAGAAAGAAAATCCGGGCTTTTGCTATTGACCTGATTGAGATATGGAAAGACATTATTATCAAGGAAACAAGCAAAAATAAGAATGGGAGCTTACATAATAATGTTGAGTTGGCAAATGGGGAGAAAGCTAAAGTTGAGAAGGTTCAGAAGACTCATTCGGTAAAGGTTGAGAAGGTTTCAAAAGCTGACACTGTCAAGATTGAGAAAACTGATAGGAATGGGACATCAAGCTCTGAAAATGTAAAGAAGGAACAATTTTCAGATGTCAGAAGTGAGAAAGCTGTTTCTCCGGCAAATGTTAAGGTAGAAAAAATGGCCAAGGATGAGAAGCAACCTTCTGGAGTGAAGAGGGCATCCTCAAGCCCTGCTGCTCCACCAAAGCTGAAAACTATGATTAAATCGAATGATGTGATGCGAGACAAAATAAGGGAAATTCTGCAAGAGGCATTCTCTAAGGTTTCTGGAGAGGCTGATGAAACAATCATGGATCAAGTAAATGCATGTGACCCTATTCGGGTTGCTGTTACAGTGGAGTCTGTACTATTTGAGAAATGGGGTCCTTCTAACGGGGCTCAAAAAGTCAAGTATAGGTCCTTGATGTTTAACCTCAAGGATCCAAACAACCCAGATTTCCGGAGAAGAGTTCTGCTTGGAGAATTTGCGCCAGAGCGACTCATCAACATGAGCACGCAAGACATGGCTAGCGATCAAAGGAAGCAGGAGAATGAGAAACTCAAACAGAAAGCTTTATTTGAGTGTGAGCGTGGACAACAACCAAAAGCCACGACCGATCAATTCAAGTGTGGTAAATGCGGTCAAAGAAAGTGCACCTATTACCAAATGCAGACCCGTAGTGCTGATGAACCTATGACAACCTATGTTACGTGCGTTTCATGCAATAACCGGTGGAAGTTCTGTTAG 1113 0.4286 MEKELVGLYDTVKKAADLASSTDSEVEESRCLDAFEQLKKFPVNYQILVSTQVGKHLKVLTKHPRKKIRAFAIDLIEIWKDIIIKETSKNKNGSLHNNVELANGEKAKVEKVQKTHSVKVEKVSKADTVKIEKTDRNGTSSSENVKKEQFSDVRSEKAVSPANVKVEKMAKDEKQPSGVKRASSSPAAPPKLKTMIKSNDVMRDKIREILQEAFSKVSGEADETIMDQVNACDPIRVAVTVESVLFEKWGPSNGAQKVKYRSLMFNLKDPNNPDFRRRVLLGEFAPERLINMSTQDMASDQRKQENEKLKQKALFECERGQQPKATTDQFKCGKCGQRKCTYYQMQTRSADEPMTTYVTCVSCNNRWKFC 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci15g0156 370 Pfam TFIIS helical bundle-like domain 36 83 IPR017923 -
Prci15g0156 370 ProSiteProfiles TFIIS N-terminal domain profile. 10 86 IPR017923 -
Prci15g0156 370 ProSitePatterns Zinc finger TFIIS-type signature. 332 367 IPR001222 GO:0003676|GO:0006351|GO:0008270
Prci15g0156 370 SMART Cys4_2 330 369 IPR001222 GO:0003676|GO:0006351|GO:0008270
Prci15g0156 370 PANTHER TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN 14 370 - -
Prci15g0156 370 MobiDBLite consensus disorder prediction 131 192 - -
Prci15g0156 370 SUPERFAMILY Zinc beta-ribbon 309 368 - -
Prci15g0156 370 SMART mid_6 204 308 IPR003618 GO:0006351
Prci15g0156 370 Pfam Transcription factor S-II (TFIIS) 330 368 IPR001222 GO:0003676|GO:0006351|GO:0008270
Prci15g0156 370 NCBIfam transcription elongation factor S-II 12 370 IPR006289 GO:0003676|GO:0005634|GO:0006368
Prci15g0156 370 ProSiteProfiles Zinc finger TFIIS-type profile. 328 368 IPR001222 GO:0003676|GO:0006351|GO:0008270
Prci15g0156 370 Pfam Transcription factor S-II (TFIIS), central domain 199 316 IPR003618 GO:0006351
Prci15g0156 370 ProSiteProfiles TFIIS central domain profile. 202 325 IPR003618 GO:0006351
Prci15g0156 370 Gene3D - 299 370 - -
Prci15g0156 370 CDD Zn-ribbon_TFIIS 323 369 - -
Prci15g0156 370 PIRSF TFIIS 2 370 IPR035100 -
Prci15g0156 370 MobiDBLite consensus disorder prediction 131 154 - -
Prci15g0156 370 SMART TFS2_5 8 85 IPR003617 GO:0005634
Prci15g0156 370 FunFam Probable Transcription elongation factor S-II 299 370 - -
Prci15g0156 370 SUPERFAMILY Elongation factor TFIIS domain 2 189 300 IPR036575 GO:0006351
Prci15g0156 370 CDD TFIIS_I 9 83 - -
Prci15g0156 370 Gene3D - 180 298 IPR036575 GO:0006351
Prci15g0156 370 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 24 94 IPR035441 -
Prci15g0156 370 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 1 96 IPR035441 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci15g0156 Prci-Chr15 1178237 1181596 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Prci15g0156 TFIIS_M 1.4e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci15g0156 K03145 - qsa:O6P43_014856 556.599