Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci15g0112 ATGGAAGAATCATCTCTACCAGCGACGATGATCTTCTCAGGCTTTTTACCAACTGGGTCATTGCTAGATTCGTTGGTTCACATATCTAATGAAGTTGCCTCCATGGAAAAGTTCCCTTTTGTTCAACTCAGGAATGCCTCATCCATGATCAGGAGGGTGAAGCTTCTTTCTTCTCTTTTCGAGGAGATTCATGAAACAGATTCCCACCTTCCTCCTTCTTCAATCCTGTGTTTCACAGAGCTCTTCTCCGTGATCAGAAGAGCGAAGCATTTGATTCAAGACTGCCAGGAAAGCGGCTCTCTCTGGAGTCTTATACAGTTAGAGTTTATTTCCAATCAATTCCATGGGCTTGTAAAGGAGATGGGAAGGGCTCTAGATATCCTTCCTCTGAGACTGCTTAATATCACAGCAGATACAAGAGAGCAAGTGGAACTTCTGCACAAGCAAGCAAAAGCGGTTGAGTCGTTCATTGATCCTCGTGAGCTGCAACGAAGAGATCAGCTTCTGCATGTAATGGCCCATAACAATCTACAGAACAAGAACAAGGGATTCCCTGAGTTTGGGAAAGTGCAACAAATATTAAGCAGCATTGGTTTGAGAACCCCATCAGACTATGACAGAGAAATTTCAAAGCTAGAGGCTGAAGCTCAGAATCAAGCAGGTACAGGAGGCTTAATCGTTATGTCTAACATACATAATCTCATATCTTTAGTTTCGTATTCCAAAGCCATGATATTCAGAGATGGAGTAAACGAAATAGATGAAGAATGTAAGCCAGCAGTGTCCGCATTAACATCTAAGAGCTCTGATAGTTCCTTGTCTTCATCTTCTTCTCAGATGACAGCGTTAGCACCTAATGTTCCTGACGAATTTCGATGCCCAATTTCACTTGATTTAATGAGAGATCCAGTGATTGTATCATCTGGGCATACTTACGATCGAATTTCAATCGCACAGTGGATAAACTCGGGACATCACACTTGCCCAAAAAGTGGGCAAAGATTAATTCACACCGCTCTCATACCCAACTATGCATTGAAGAGTGTTGTGCAGCAATGGTGCTATGAGAATAACGTCCCATTGAATGAGCCGACATCATCTTCTTCCTCGACTTCGGAGGATCCCAACAGCAAGGACAACTCAAGCGAAAATACTGTCGATCATATCGCTGCTAAAAAAGCAGCCATAGATGCTGTCAAAATGACAGCAGAATTTCTGGTAGGAAAGTTGGCAACTGGGTCAGCTGAAGTCCAAAGGCAGGCTGCCTATGAGCTAAGATTACTAGCAAAAACAGGGATGGATAACCGAAGAGTCATCGCCGAGGCAGGGGCAATTCCATTTCTAGTGACATTACTGGGATCCCATGATCCAAGAATCCAGGAGCACGCCGTCACGGCCTTGTTTAATCTCTCCATATTCGACAACAACAAGGTTTTGATTGTGGCTGCCGGAGCACTGGATTACATAGTAGAAGTGCTTGAATCAGGAAAAACTATGGAGGCAAGAGAAAATGCAGCAGCAGCAATCTTTAGCTTGACTATGTTTGATGATTGCAAGGTGGACATCGGAGCTCGTCCAAGGGCCATACCCGCATTAGTAGGACTGTTAAGAGAGGGCACTCCTATTGGGAAAAGAGATGCTGCCACTGCCATTTTCAATCTTGCAGTTTACAATCCCAACAAGGCCAAGATCGTTAATGCTGGGGCTGTTCCTCTGCTTGTTGAGTTGCTTATGGATGATAGGGCTGGGATCACAGATGATTGTTTGGCTGTGCTTGCTTTGCTTCTGGGTTGCTCTGAAGGTTTGGACAAGATAAGGAATAGTAAAGTGTTGGTGCCTCTTCTGATAGATCTTCTGAGGTTTGGGTCACCCAAAGGGAAGGAGAATTCTATAACGCTTCTGCTGGGGTTGTGCAAGGAAGAAGGTGAGGCGGTGGCAAGGAAACTGCTGGCAAATCCTCGAAGCATTCCTTCTCTTCAAAGCTTGGCCGCTGACGGTTCTTTAAGAGCTCGAAGGAAGGCCGTAGCTTTGCTTAGACTGCTCAATAGGTGCTGCTCTCAGCCTCATCATTCTCTTTGA 2079 0.4483 MEESSLPATMIFSGFLPTGSLLDSLVHISNEVASMEKFPFVQLRNASSMIRRVKLLSSLFEEIHETDSHLPPSSILCFTELFSVIRRAKHLIQDCQESGSLWSLIQLEFISNQFHGLVKEMGRALDILPLRLLNITADTREQVELLHKQAKAVESFIDPRELQRRDQLLHVMAHNNLQNKNKGFPEFGKVQQILSSIGLRTPSDYDREISKLEAEAQNQAGTGGLIVMSNIHNLISLVSYSKAMIFRDGVNEIDEECKPAVSALTSKSSDSSLSSSSSQMTALAPNVPDEFRCPISLDLMRDPVIVSSGHTYDRISIAQWINSGHHTCPKSGQRLIHTALIPNYALKSVVQQWCYENNVPLNEPTSSSSSTSEDPNSKDNSSENTVDHIAAKKAAIDAVKMTAEFLVGKLATGSAEVQRQAAYELRLLAKTGMDNRRVIAEAGAIPFLVTLLGSHDPRIQEHAVTALFNLSIFDNNKVLIVAAGALDYIVEVLESGKTMEARENAAAAIFSLTMFDDCKVDIGARPRAIPALVGLLREGTPIGKRDAATAIFNLAVYNPNKAKIVNAGAVPLLVELLMDDRAGITDDCLAVLALLLGCSEGLDKIRNSKVLVPLLIDLLRFGSPKGKENSITLLLGLCKEEGEAVARKLLANPRSIPSLQSLAADGSLRARRKAVALLRLLNRCCSQPHHSL 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci15g0112 692 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 286 361 IPR013083 -
Prci15g0112 692 PANTHER U BOX DOMAIN-CONTAINING 44 686 - -
Prci15g0112 692 SMART Ubox_2 290 353 IPR003613 GO:0004842|GO:0016567
Prci15g0112 692 Gene3D - 374 520 IPR011989 -
Prci15g0112 692 FunFam RING-type E3 ubiquitin transferase 498 685 - -
Prci15g0112 692 SUPERFAMILY RING/U-box 274 361 - -
Prci15g0112 692 CDD RING-Ubox_PUB 288 340 IPR045210 -
Prci15g0112 692 ProSiteProfiles U-box domain profile. 286 360 IPR003613 GO:0004842|GO:0016567
Prci15g0112 692 Pfam Armadillo/beta-catenin-like repeat 558 593 IPR000225 GO:0005515
Prci15g0112 692 Pfam Armadillo/beta-catenin-like repeat 434 471 IPR000225 GO:0005515
Prci15g0112 692 FunFam RING-type E3 ubiquitin transferase 286 360 - -
Prci15g0112 692 SUPERFAMILY ARM repeat 404 681 IPR016024 -
Prci15g0112 692 SMART arm_5 387 430 IPR000225 GO:0005515
Prci15g0112 692 SMART arm_5 432 472 IPR000225 GO:0005515
Prci15g0112 692 SMART arm_5 473 514 IPR000225 GO:0005515
Prci15g0112 692 SMART arm_5 515 556 IPR000225 GO:0005515
Prci15g0112 692 SMART arm_5 598 639 IPR000225 GO:0005515
Prci15g0112 692 SMART arm_5 557 597 IPR000225 GO:0005515
Prci15g0112 692 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 527 569 IPR000225 GO:0005515
Prci15g0112 692 Pfam U-box domain 287 357 IPR003613 GO:0004842|GO:0016567
Prci15g0112 692 MobiDBLite consensus disorder prediction 362 384 - -
Prci15g0112 692 Gene3D - 40 132 IPR036537 GO:0007166
Prci15g0112 692 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 443 485 IPR000225 GO:0005515
Prci15g0112 692 Gene3D - 521 682 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci15g0112 Prci-Chr15 829333 832679 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci15g0112 19 687 U-box Gene Family AT3G46510 36.999 9.51e-127 389
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci15g0112 - - qsa:O6P43_013820 1022.31