Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci15g0110 ATGGACGCCCTTTCTTCCTCGCCTCAGCATGCGCTTCACCCTCCCCGAGAAACCACGCCCACCGATACCGCCACCGTTGACACCGCCACTCCCTGCCAAACGTCTCCTCATAACACCAAAACCGACTCTGCTCGCAAATGCAAAGGCAAAGGTGGTCCCGACAACAACAAATTTAGGTACCGAGGCGTCAGGCAACGGAGCTGGGGCAAATGGGTCGCTGAGATCCGAGAGCCTCGCAAGCGGACCCGGAAGTGGCTCGGCACCTTCGCCACCGCCGAGGAGGCCGCTCGAGCCTACGACCGCGCCGCTATTATCCTCTACGGCTCTAGGGCTCAGCTCAATTTACAACCCTCCGCCGCCTCTTCTCCCCACTCTTCCTCCTCTCGGGCCTCTTCCTCTTCTCAAACCCTCCGCCCATTGCTTCCCCGCCCCTCTGGCCTTGGCCTCGCCTTTTCTTCCGTCGCCACGTCGGGCTTCTTACCCTGCGGGGTTTACCCTAACGATGCTAATTATATCCCGCAAATGATGTGCCCGGAGAATAATCTGGTGCAACAGCATCGTCAAGTGGTGCAACTTCCACAGAAACCGTATCAGTCCCTGGAATCCGATGGAAATATTGTCGACAGCTCCAACACAGCAACCTCGTACCAGGATCAGCTACAGCAGCAGCAGCATCTGCCGAATCAACGGCAGCATCAGAATTGCATGCACGATGATATTAGTTCTCTGGTGAGTTCGGTCGGGTCAAGTTTGTGTGCTTCGCAGGCACAGACTGTCGTTTCACCTGCGGATCCGTGGCCATTGACGAATGAGGAAGAGTACCCACCAAGTCTATGGGACTACTATAATGATCCCTTCCTCTTTGATTTCTAA 873 0.559 MDALSSSPQHALHPPRETTPTDTATVDTATPCQTSPHNTKTDSARKCKGKGGPDNNKFRYRGVRQRSWGKWVAEIREPRKRTRKWLGTFATAEEAARAYDRAAIILYGSRAQLNLQPSAASSPHSSSSRASSSSQTLRPLLPRPSGLGLAFSSVATSGFLPCGVYPNDANYIPQMMCPENNLVQQHRQVVQLPQKPYQSLESDGNIVDSSNTATSYQDQLQQQQHLPNQRQHQNCMHDDISSLVSSVGSSLCASQAQTVVSPADPWPLTNEEEYPPSLWDYYNDPFLFDF 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci15g0110 290 SUPERFAMILY DNA-binding domain 59 117 IPR016177 GO:0003677
Prci15g0110 290 ProSiteProfiles AP2/ERF domain profile. 59 116 IPR001471 GO:0003700|GO:0006355
Prci15g0110 290 MobiDBLite consensus disorder prediction 1 61 - -
Prci15g0110 290 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 25 254 - -
Prci15g0110 290 MobiDBLite consensus disorder prediction 11 40 - -
Prci15g0110 290 FunFam Ethylene-responsive transcription factor 2 59 117 - -
Prci15g0110 290 MobiDBLite consensus disorder prediction 117 139 - -
Prci15g0110 290 MobiDBLite consensus disorder prediction 199 232 - -
Prci15g0110 290 SMART rav1_2 59 122 IPR001471 GO:0003700|GO:0006355
Prci15g0110 290 CDD AP2 59 116 IPR001471 GO:0003700|GO:0006355
Prci15g0110 290 Gene3D AP2/ERF domain 58 116 IPR036955 GO:0003700|GO:0006355
Prci15g0110 290 PRINTS Ethylene responsive element binding protein signature 82 98 IPR001471 GO:0003700|GO:0006355
Prci15g0110 290 PRINTS Ethylene responsive element binding protein signature 60 71 IPR001471 GO:0003700|GO:0006355
Prci15g0110 290 Pfam AP2 domain 59 107 IPR001471 GO:0003700|GO:0006355
Prci15g0110 290 MobiDBLite consensus disorder prediction 41 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci15g0110 Prci-Chr15 810960 813075 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci15g0110 45 290 AP2-EREBP Transcription Factor Family AT2G40220 44.710 5.66e-50 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Prci15g0110 AP2 2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci15g0110 K09286 - jre:108991752 232.646