Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci15g0109 ATGGCAAGCCAAGATTCCCAGGGTTTTACATGGCACTACACGGAGCTGGATGACCGAAATCTCGAAATCCGAGGCCGAACATTTTTCTTCGTGGTCGGGCTGTTCTCTATTATCCTTTTCGCGACCCTTCTCTTCCTGTATGCTCGCTGGATCTGGAGGTACCGTGGCCAACATCCTACCACGTACCATTCCAACGGAGCACGCCTAACACCGCCGCCTTCTCCGCCTCAGGGCCTCGACCCGGTTTCGATCAAGAAATTGCCTATAGTTTTGCACCAAAGGGCTTCGGACGCCACCTATAAATTGGAGGGAACAGAGTGCTGTATTTGCCTGAGCACGTTCAAAGACGGAGAGAAATTGAAGGTTTTGCCCGGCTGCGACCATAGTTTCCATTGCGAGTGTGTTGATAAGTGGCTTTCCAATCACTCTAGCTGCCCTCTCTGCAGATCTTCTCTCAAGGTTCAGTCTCCCTTTCCCAAGATTTTGACTCAAGAACCAGCCAATCGAATCAATCTTCCCTGGTAG 525 0.5086 MASQDSQGFTWHYTELDDRNLEIRGRTFFFVVGLFSIILFATLLFLYARWIWRYRGQHPTTYHSNGARLTPPPSPPQGLDPVSIKKLPIVLHQRASDATYKLEGTECCICLSTFKDGEKLKVLPGCDHSFHCECVDKWLSNHSSCPLCRSSLKVQSPFPKILTQEPANRINLPW 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci15g0109 174 SMART ring_2 107 148 IPR001841 -
Prci15g0109 174 CDD RING-H2_EL5-like 106 149 - -
Prci15g0109 174 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 30 156 - -
Prci15g0109 174 SUPERFAMILY RING/U-box 99 157 - -
Prci15g0109 174 ProSiteProfiles Zinc finger RING-type profile. 107 149 IPR001841 -
Prci15g0109 174 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 73 155 IPR013083 -
Prci15g0109 174 FunFam RING-H2 finger protein ATL66 71 154 - -
Prci15g0109 174 Pfam Ring finger domain 106 149 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci15g0109 Prci-Chr15 799794 801461 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci15g0109 4 156 C3H Transcription Factor Family AT3G11110 45.752 1.06e-36 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci15g0109 - - gmx:100803278 243.432