Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci15g0085 ATGGCCTCTGGCTGCCGAGATCGCACGTTGGAGTTCCGATCTCTCTCTCAAACTCTGAAGAAGATCGAGAGACTCTCATCACCTGATCAAGCTGAAGATGTTCCTTCTACATCGAAACAATACACTCCTGTGTCCTATTCTAGATCTGAATTCAACAGGAAGGCCTCTCGAATTGGGTTGGGTATTCATGAAGCCTCCCAGAAGATTTCGAGGCTTGCTCAATTGGCAAAGAAGTCATCGATGTTTAATGATCCCACTGTGGAAATACAAGAATTGACGGCCTTGATTAAGAATGACATCACGGCATTGAATTCAGCTCTTTCAGATTTACAAACTATTCAAAACATGGAAATAGCTGATGGAAATTATTCGGAGGATAGAATTGTTCATTCAACAGCTGTCTGTGATGACTTAAAGGGCAAACTTATGGGGGCAACTAAGCAGCTTCACGATGTGTTAACTAGCAGGACAGAGAATATCAAGGCTCATGAGAATAGGAAGCAAATATTTTCCAAGAAAGCGTCTAGAGGCAATCCTTTCCAGCATCGATCAGAGCCAGTGACTGAGCCACCCCCTTGGTCAAATTCATTAAATGCATCTGAAAGTTCGCAGCAAATATCAGCATCCCTTTCAAATGAAATCACACCGAGCAATCAATTAAGACGGAGGCTAGCTGCTGACAACGCTCCATCCCAGCAAATGGAAATGTCTATGATGCAGCAAGTGGTCCCAAGACAAGAAAGTTATAGTCAGAGTCGTGCAACTGCTCTGCACAGTGTGGAATCTACCATCACAGAACTGAGTGGGATTTTCACTCATTTGGCCACAATGGTTGCTCATCAAGGGGAACTAGCTATCAGGATTGATGACAACATGGATGAGTCATTGGCAAATGTTGAAGGAGCTCACAGTTCTTTATTGAAGCATCTCAGCCAAATATCATCGAATAGGTGGCTTCTGATCAAGATATTTGCCGTTCTGATACTATTTCTGCTGATCTTCATATTCTTCGTGGCCTGA 1020 0.4324 MASGCRDRTLEFRSLSQTLKKIERLSSPDQAEDVPSTSKQYTPVSYSRSEFNRKASRIGLGIHEASQKISRLAQLAKKSSMFNDPTVEIQELTALIKNDITALNSALSDLQTIQNMEIADGNYSEDRIVHSTAVCDDLKGKLMGATKQLHDVLTSRTENIKAHENRKQIFSKKASRGNPFQHRSEPVTEPPPWSNSLNASESSQQISASLSNEITPSNQLRRRLAADNAPSQQMEMSMMQQVVPRQESYSQSRATALHSVESTITELSGIFTHLATMVAHQGELAIRIDDNMDESLANVEGAHSSLLKHLSQISSNRWLLIKIFAVLILFLLIFIFFVA 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci15g0085 339 CDD SNARE_syntaxin5 250 326 - -
Prci15g0085 339 MobiDBLite consensus disorder prediction 188 245 - -
Prci15g0085 339 Pfam SNARE domain 284 335 IPR000727 -
Prci15g0085 339 PANTHER SYNTAXIN 49 334 IPR045242 -
Prci15g0085 339 MobiDBLite consensus disorder prediction 157 171 - -
Prci15g0085 339 ProSitePatterns Syntaxin / epimorphin family signature. 253 292 IPR006012 GO:0005484|GO:0006886|GO:0016020
Prci15g0085 339 MobiDBLite consensus disorder prediction 23 45 - -
Prci15g0085 339 SUPERFAMILY t-snare proteins 47 302 IPR010989 GO:0016020|GO:0016192
Prci15g0085 339 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 247 309 IPR000727 -
Prci15g0085 339 Gene3D - 46 302 - -
Prci15g0085 339 SMART tSNARE_6 242 309 IPR000727 -
Prci15g0085 339 MobiDBLite consensus disorder prediction 157 245 - -
Prci15g0085 339 Pfam Syntaxin-5 N-terminal, Sly1p-binding domain 5 21 IPR021538 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci15g0085 Prci-Chr15 574325 577459 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci15g0085 1 339 SNARE and Associated Proteins AT5G05760 67.941 1.98e-155 437
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci15g0085 K08490 - qsa:O6P43_013881 470.7