Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci15g0065 ATGACTGAAGGAGACCGTGCCGGCTCTGCCTCTCCCTCTCCGTCTCTTCCCCTCGAACCTCCCCACAATGGGGCCGCCGACTCGGAAGTCGCCGGTTTTTCCGACTTGGAACCCCTTGCAGGCGACGCCGACTTTTCTGGGCTTGGAGACGGAAACGTTGCTGGTAGAGTGAAGGGACCTTGGTCCCCGGAGGAGGATGCCGTTCTCAGTCGATTGGTCAGCAAGTTTGGGGCAAGGAATTGGAGCATGATCGCGCGAGGGATACCGGGTCGCTCCGGCAAGTCGTGCCGTCTCCGTTGGTGTAATCAGCTTGACCCCGGTGTTAAACGCAAGCCCTTTACTGAAGAAGAAGATCGTATTATAGTTGCAGCCCATGCAATGCATGGAAACAAATGGGCAGCAATAGCTAGGCTTCTTCCAGGACGAACCGATAATGCTATAAAAAATCACTGGAATTCTACACTTAAGCGCAGGTGCTTGGATCTTCGAAGATACATACCGGTGGGAGCTGGCGTGGAAGAGGGCAGCCTTGAGGCCCCTGAAAAAATAAAGGCATCTTCCGAAGAAACCATGTCAGCAGGGTCTCCATTGAATCCTACACAAATTAAAAATGTCGGGATGGATGGTGGTATCAATCAGCACGAAGATAATCCTCCAAGAAACCATGGTGCTGAAGTGGAGGAATATCCTACCGTGTGTCAGCCAGTAGCACGTGTTAGTGCATTCAGTGTCTATAATCCTCCAAGCAGGCCAACAACTGGATCCACGTACTCAAGGATGCTCCCAATGCATGGCCCTTTGATCCAATCGTCCAAACTCAAAGTAGGTGCCTACAAGCTATTTGAAGATGTTGGCTGTGAACCCATGGTTCCCGTGCAATGTGGTCATGGCTGCTGTTCTGCAAGTTCTCAGGAAAGCCATTCTCATGAGTCGCTGCTAGGTCCTGAGTTCGCTGACTATGCGGAGCCCCCCTCTTTAACAAGTCATGATTTGATCTCTATAGCTACAGATTTGAACAATATTGCTTGGATCAAGAGTGGCCTAGATGCCAGAGTAACGGAGAATGCAGCAAACTTGACGCCATCTCAAGGCGTTACTACTGCCTTCCAAAATTGCTTCTTTGAGGAGGGAGCAAGCAAGTTTGTGGGTGTGATGCAAGACATGTTAACAACGCAGAAGTCTAGCCATCCATTTGCAATGCCTGCAGAGGTTTGA 1215 0.5045 MTEGDRAGSASPSPSLPLEPPHNGAADSEVAGFSDLEPLAGDADFSGLGDGNVAGRVKGPWSPEEDAVLSRLVSKFGARNWSMIARGIPGRSGKSCRLRWCNQLDPGVKRKPFTEEEDRIIVAAHAMHGNKWAAIARLLPGRTDNAIKNHWNSTLKRRCLDLRRYIPVGAGVEEGSLEAPEKIKASSEETMSAGSPLNPTQIKNVGMDGGINQHEDNPPRNHGAEVEEYPTVCQPVARVSAFSVYNPPSRPTTGSTYSRMLPMHGPLIQSSKLKVGAYKLFEDVGCEPMVPVQCGHGCCSASSQESHSHESLLGPEFADYAEPPSLTSHDLISIATDLNNIAWIKSGLDARVTENAANLTPSQGVTTAFQNCFFEEGASKFVGVMQDMLTTQKSSHPFAMPAEV 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci15g0065 404 FunFam MYB transcription factor 58 109 - -
Prci15g0065 404 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 105 159 IPR017930 -
Prci15g0065 404 Pfam Myb-like DNA-binding domain 58 104 IPR001005 -
Prci15g0065 404 Pfam Myb-like DNA-binding domain 110 154 IPR001005 -
Prci15g0065 404 PANTHER MYB PROTEIN-RELATED 58 211 - -
Prci15g0065 404 Gene3D - 112 158 - -
Prci15g0065 404 FunFam Transcription factor MYB44 112 158 - -
Prci15g0065 404 CDD SANT 112 155 IPR001005 -
Prci15g0065 404 ProSiteProfiles Myb-like domain profile. 105 155 IPR001005 -
Prci15g0065 404 MobiDBLite consensus disorder prediction 1 33 - -
Prci15g0065 404 Gene3D - 57 109 - -
Prci15g0065 404 ProSiteProfiles Myb-like domain profile. 58 104 IPR001005 -
Prci15g0065 404 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 56 104 IPR017930 -
Prci15g0065 404 CDD SANT 60 102 IPR001005 -
Prci15g0065 404 SUPERFAMILY Homeodomain-like 55 151 IPR009057 -
Prci15g0065 404 SMART sant 57 106 IPR001005 -
Prci15g0065 404 SMART sant 109 157 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci15g0065 Prci-Chr15 387677 392718 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci15g0065 53 389 MYB Transcription Factor Family AT3G55730 48.159 3.30e-102 307
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Prci15g0065 Myb_DNA-binding 6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci15g0065 K09422 - gmx:100781228 465.692