Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci159g0002 ATGGGGAAAGGTAGACCTAGGGCTGTGGAAAAAGGTGTAGCAGGACAGAGTCTCAGTGTTTCATCGTCTGGGTCAGTGAGTATACCGTCAGGGCCTGTATATTTTCCCACCGAGGACGAGTTCAGAGACCCGTTGGATTATATTTATAAGATTAGACCTGAGGCTGAGCCATATGGAATTTGTAAGATTGTACCACCAAAGAGTTGGAAACCCCCATTTGCTTTGGATCTAGATTTTTTTACTTTCCCCACTAAAACACAGGAAATTCACAAGTTACAGGCTCGTCCTGCAGCTTGTGACTCCAAGACTTTTGAGTTGGAGTACTCTAGGTTTTTAGAGGATCAATGCGGTAAAAAGTCAAGGAAGAAAATTGTATTTGAAGGGGAAGAACTGGACTTGTGCAAACTGTTTAATGCTGTTAAGAGATATGGTGGATATGATAAGGTTGTGAGGGAAAAGAAATGGGGGGATGTTTCACGGTTTGTAGGGCCAAGTAGAAAAATTACCGACTGTGCAAAGCACGTCCTATCTCAGTTGTACTCTGAACATTTGTATGATTATGAGAATTTCTATAGTCGGCTGAATCAACAGACAGGCAAGAAAGGCATGCTTGAGGATGAACAAAGTGATCATGGCATTCGATCTTCAGGATCCAAGAGGATAAGAAGAAGTGTTGATTGTTTGAAAGTTAAGGATTGTAAAGTGCAGGAGGAAGAACATGACCAGATTTGTGAGCAATGTAGAAGTGGTTTGCATGGGGACGTAATGCTTTTGTGTGATAGGTGTGACAAGGGCTGGCATATATATTGTCTGTCTCCACCCTTGAAGCAAATTCCTCCAGGAAACTGGTATTGCTTTAATTGCTTGAATTCTGACAGAGACAGCTTTGGTTTTGTGCCTGGTAAGCAATACACTTTGGAAGCCTTTAGACGTGTGGCTGATCGGTCAAGGAGGAGATGGTTTGGACCAGGACCTGTTTCTAGGGTGCAGATAGAGAAGAAATTTTGGGAAATTGTAGAGGGATTGGTTGGTGAAGTTGAGGTTATGTATGGAAGTGATTTGGATACATCTGTCTTTGGAAGTGGTTTTCCACGCTCAACTGATCAGAAACCAGAGCCAATTGATTCAAAATTATGGGATGAGTACTCTTCTAACCCATGGAATCTTAACAATTTGCCTAAATTGAAAGGGTCAATGCTTCGAGCTGTTCATCATAATATCACGGGGGTGATGGTACCCTGGCTGTATATTGGGATGCTATTCTCATCCTTTTGCTGGCATTTTGAGGATCATTGCTTTTACTCAATAAATTATCTACACTGGGGAGAGCCAAAATGCTGGTACAGTGTTCCTGGTAGTGAAGCCGGTGCTTTTGAGAAGGTGATGAGAAGCAGTCTTCCTGATCTTTTTGATGCACAACCAGATCTGCTTTTTCAGCTTGTAACAATGTTAAACCCATCTGTTTTGCAAAAAAATGGAGTTCCAGTCTACAGCATAATTCAGGAGCCTGGGAATTTTGTCATTACCTTTCCCAGATCTTACCATGGCGGTTTTAATCTTGGTTTAAATTGTGCAGAGGCAGTTAATTTTGCCCCTGCTGACTGGCTACCTTATGGTGCATTTGGAGCTGATCTCTACCAGCGATATCACAAAGCTGCTGTCTTGTCTCATGAGGAGCTTCTTTGTGTAGTCGCCCAGTACAGTGACATTGATACCAGAGCATCTCCTTATTTGAAGAAAGAATTGCTTCGCATATATGATAAAGAGAAATCATGGAGAGAAAAGCTCTGGAAAAATGGTATTGTCAAATCATCTTGCATGGCTTGTCGGCAATATCCTCAATATGTTGGAACTGAAGAGGATCCGTCATGCATTATTTGCCAGCAATGTCTATATCTTTCAGCTGTTGTGTGCAGCTGCAGGCCATCTTCTTTTGTATGTCTGGAGCACTGGGAACATCTTTGTGAGTGTAAAACTGTAAAACTACGTCTTCTCTATCGTCACTCACTTGCAGAATTGCATGACTTGGCACTTTCTGTGGACAATTATACTTCTGATGATAAAGCACTGTTTAGGAATATAAGAAAGCACTCTTCATGTCCGGGCACTTTGACAAAAAAGGTAAAAGGTGGTTCCATTACTTTCTCGCAGCTTGCTACACAATGGCTTCTGCGATCTAGTGAGATTCTTCAGAATCCTTATTCAAGCGATGCTGTTGTTTCTGTGCTGAGGGAAGCTGAACAGTTTCTTTGGGCCGGTCCTGAGATGAATTCTGTTCGAGATATGGTGAAGAGTTTGATTGAAGCTCAGAAGTGGGCAGAAGGGATAAGAGATTGTTTAAGAAAAATTGAAGCCTGGTTGTGTGATCAGGACTTTGACAGAGAGAAAGTGCACCTAGAATTTGTTGATCAGCTGCTAACATTTAATTTTGCACCATGCAATGAGCCTGCTTATCATAAGTTGAAGGAATATACAGAAGGGGCTGTGTTGTTAAGTCAGGAGATTAATATTGCTTTGTCAAAGTGTTCAAAGATGTCTGAGTTGGAATCATTGCATTCTAGAGTTTGTGGCTATCCACTCTAC 2583 0.4173 MGKGRPRAVEKGVAGQSLSVSSSGSVSIPSGPVYFPTEDEFRDPLDYIYKIRPEAEPYGICKIVPPKSWKPPFALDLDFFTFPTKTQEIHKLQARPAACDSKTFELEYSRFLEDQCGKKSRKKIVFEGEELDLCKLFNAVKRYGGYDKVVREKKWGDVSRFVGPSRKITDCAKHVLSQLYSEHLYDYENFYSRLNQQTGKKGMLEDEQSDHGIRSSGSKRIRRSVDCLKVKDCKVQEEEHDQICEQCRSGLHGDVMLLCDRCDKGWHIYCLSPPLKQIPPGNWYCFNCLNSDRDSFGFVPGKQYTLEAFRRVADRSRRRWFGPGPVSRVQIEKKFWEIVEGLVGEVEVMYGSDLDTSVFGSGFPRSTDQKPEPIDSKLWDEYSSNPWNLNNLPKLKGSMLRAVHHNITGVMVPWLYIGMLFSSFCWHFEDHCFYSINYLHWGEPKCWYSVPGSEAGAFEKVMRSSLPDLFDAQPDLLFQLVTMLNPSVLQKNGVPVYSIIQEPGNFVITFPRSYHGGFNLGLNCAEAVNFAPADWLPYGAFGADLYQRYHKAAVLSHEELLCVVAQYSDIDTRASPYLKKELLRIYDKEKSWREKLWKNGIVKSSCMACRQYPQYVGTEEDPSCIICQQCLYLSAVVCSCRPSSFVCLEHWEHLCECKTVKLRLLYRHSLAELHDLALSVDNYTSDDKALFRNIRKHSSCPGTLTKKVKGGSITFSQLATQWLLRSSEILQNPYSSDAVVSVLREAEQFLWAGPEMNSVRDMVKSLIEAQKWAEGIRDCLRKIEAWLCDQDFDREKVHLEFVDQLLTFNFAPCNEPAYHKLKEYTEGAVLLSQEINIALSKCSKMSELESLHSRVCGYPLYVKDVEKLERKISSTKVWLQRARSCISIKHPAAVELDVLYKLKSEIMELQVLLPEMDVIQNILSQAESCGSKCSEMLEGPMNLKNVKMLLKEWDGFMVDVPEVKLLRKYYKDAVSWVSNFNHIVETTHEREDQHNVIDELKSILGDGLSLKIHVDELPLVETELQKALCREKALQAYKSRLSLEFVQEVMKEARLLQLEGEKLFVGLSGLLAVAIPWEERAKEILSHKASFSDFRDIIRASESIFMILPSLDDMKAALLEANSWLMNSKQFLVSSTCPSDSPLKVEELQMLVSQSKLLKISFEEVRMLEIVLQNCKKWECEACSLLEDAQHTFELDDVVHGISSGLMSKVEGLIARMQSSTKSGLSLGFDFDELPKLKATCSTLRWCKKILSFCNLSPSLEDVLEATKDFPHLCDSGALLNILIRGVKWLRQALEVISGSHNSRRSKSGEVDNIIRDYQTINIPFAAIVYQLEEAIGKHKMWQEQAHQFLSLCSGKRSWVSMLKLKELGDKVAFTCRELDLISSEVEKVENWKKHCMNFVGTLVQNENSLLDVLQKMKQSLDRSLFIYGKLKDCKDECLCIYCFTDFEDQEYLTCSTCGNCYHTLCIRPLVDNSHEDYTCSSCKILKGESNYKKGTLPVGFGVKRAELKVLLELLSDAKNLCVRIDETDALNQLVEQALLCRSCLRDIVNFTSADVDNDLSTISEKLTIAIKACEVAGVSDQQDLHNFELALARHLWKIRVNRMLNSLQNPSIQEIQKHLKEGLAMEISPEDRYMLQLSKVNCLYLQWAELTKKVAVDSGAFSLDKVFKLIAEGEKLPVNVDEDLRILMARSMLYCICRKPFDPGRMIACNQCGEWYHFDCMKLPYSEEFYTCPACNPSTAGMATSLDHERLTSGKLEEPKTPSPRHTNPRKKQKMDEASVSHKMCGSEDHIEDNDCSYSRGIECLRWQNRKPFRRAAKKRVDFRRHSSFLCIHSNN 1837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci159g0002 1837 Pfam ARID/BRIGHT DNA binding domain 103 188 IPR001606 GO:0003677
Prci159g0002 1837 Pfam PHD-finger 243 290 IPR019787 -
Prci159g0002 1837 Pfam PHD-finger 1695 1738 IPR019787 -
Prci159g0002 1837 PANTHER LYSINE-SPECIFIC DEMETHYLASE 27 1163 - -
Prci159g0002 1837 SMART cupin_9 381 547 IPR003347 -
Prci159g0002 1837 SUPERFAMILY ARID-like 81 197 IPR036431 GO:0003677
Prci159g0002 1837 Gene3D Cupin 13 131 - -
Prci159g0002 1837 ProSitePatterns Zinc finger PHD-type signature. 244 288 IPR019786 -
Prci159g0002 1837 Pfam PLU-1-like protein 1036 1185 IPR013637 -
Prci159g0002 1837 Pfam PLU-1-like protein 1141 1395 IPR013637 -
Prci159g0002 1837 Pfam PLU-1-like protein 741 1027 IPR013637 -
Prci159g0002 1837 SUPERFAMILY Clavaminate synthase-like 366 564 - -
Prci159g0002 1837 FunFam Predicted protein 349 552 - -
Prci159g0002 1837 FunFam Transcription factor jumonji (JmjC) domain-containing protein 17 121 - -
Prci159g0002 1837 CDD ARID 100 188 - -
Prci159g0002 1837 SMART PHD_3 1439 1484 IPR001965 -
Prci159g0002 1837 SMART PHD_3 1695 1737 IPR001965 -
Prci159g0002 1837 SMART PHD_3 243 289 IPR001965 -
Prci159g0002 1837 SUPERFAMILY FYVE/PHD zinc finger 1690 1740 IPR011011 -
Prci159g0002 1837 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1685 1753 IPR013083 -
Prci159g0002 1837 Pfam jmjN domain 32 65 IPR003349 -
Prci159g0002 1837 ProSiteProfiles Zinc finger PHD-type profile. 241 291 IPR019787 -
Prci159g0002 1837 ProSiteProfiles JmjC domain profile. 381 547 IPR003347 -
Prci159g0002 1837 ProSiteProfiles ARID domain profile. 98 192 IPR001606 GO:0003677
Prci159g0002 1837 SMART JmjN_1 30 71 IPR003349 -
Prci159g0002 1837 Pfam JmjC domain, hydroxylase 414 530 IPR003347 -
Prci159g0002 1837 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1372 1489 IPR013083 -
Prci159g0002 1837 MobiDBLite consensus disorder prediction 1 27 - -
Prci159g0002 1837 SUPERFAMILY FYVE/PHD zinc finger 1430 1486 IPR011011 -
Prci159g0002 1837 MobiDBLite consensus disorder prediction 1752 1780 - -
Prci159g0002 1837 ProSiteProfiles JmjN domain profile. 31 72 IPR003349 -
Prci159g0002 1837 SMART bright_3 99 193 IPR001606 GO:0003677
Prci159g0002 1837 ProSitePatterns Zinc finger PHD-type signature. 1696 1736 IPR019786 -
Prci159g0002 1837 CDD PHD_RSF1 244 288 - -
Prci159g0002 1837 SUPERFAMILY FYVE/PHD zinc finger 237 291 IPR011011 -
Prci159g0002 1837 ProSiteProfiles Zinc finger RING-type profile. 1440 1484 IPR001841 -
Prci159g0002 1837 Pfam C5HC2 zinc finger 624 675 IPR004198 -
Prci159g0002 1837 Gene3D Cupin 270 553 - -
Prci159g0002 1837 SMART ARID_2 95 188 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci159g0002 31 95 JUMONJI Transcription Factor Family AT1G08620 55.072 5.26e-09 59.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Prci159g0002 PLU-1 9.4e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci159g0002 K11446 - gmx:100789512 2644