Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci159g0001 ATGGGGAAAGGTAGACCTAGGGCTGTGGAAAAAGGTGTAGCAGGACAGAGTCTCAGTGTTTCATCGTCTGGGTCAGTGAGTATACCGTCAGGGCCTGTATATTTTCCCACCGAGGACGAGTTCAGAGACCCGTTGGATTATATTTATAAGATTAGACCTGAGGCTGAGCCATATGGAATTTGTAAGATTGTACCACCAAAGAGTTGGAAACCCCCATTTGCTTTGGATCTAGATTTTTTTACTTTCCCCACTAAAACACAGGAAATTCACAAGTTACAGGCTCGTCCTGCAGCTTGTGACTCCAAGACTTTTGAGTTGGAGTACTCTAGGTTTTTAGAGGATCAATGCGGTAAAAAGTCAAGGAAGAAAATTGTATTTGAAGGGGAAGAACTGGACTTGTGCAAACTGTTTAATGCTGTTAAGAGATATGGTGGATATGATAAGGTTGTGAGGGAAAAGAAATGGGGGGATGTTTCACGGTTTGTAGGGCCAAGTAGAAAAATTACCGACTGTGCAAAGCACGTCCTATCTCAGTTGTACTCTGAACATTTGTATGATTATGAGAATTTCTATAGTCGGCTGAATCAACAGACAGGCAAGAAAGGCATGCTTGAGGATGAACAAAGTGATCATGGCATTCGATCTTCAGGATCCAAGAGGATAAGAAGAAGTGTTGATTGTTTGAAAGTTAAGGATTGTAAAGTGCAGGAGGAAGAACATGACCAGATTTGTGAGCAATGTAGAAGTGGTTTGCATGGGGACGTAATGCTTTTGTGTGATAGGTGTGACAAGGGCTGGCATATATATTGTCTGTCTCCACCCTTGAAGCAAATTCCTCCAGGAAACTGGTATTGCTTTAATTGCTTGAATTCTGACAGAGACAGCTTTGGTTTTGTGCCTGGTAAGCAATACACTTTGGAAGCCTTTAGACGTGTGGCTGATCGGTCAAGGAGGAGATGGTTTGGACCAGGACCTGTTTCTAGGGTGCAGATAGAGAAGAAATTTTGGGAAATTGTAGAGGGATTGGTTGGTGAAGTTGAGGTTATGTATGGAAGTGATTTGGATACATCTGTCTTTGGAAGTGGTTTTCCACGCTCAACTGATCAGAAACCAGAGCCAATTGATTCAAAATTATGGGATGAGTACTCTTCTAACCCATGGAATCTTAACAATTTGCCTAAATTGAAAGGGTCAATGCTTCGAGCTGTTCATCATAATATCACGGGGGTGATGGTACCCTGGCTGTATATTGGGATGCTATTCTCATCCTTTTGCTGGCATTTTGAGGATCATTGCTTTTACTCAATAAATTATCTACACTGGGGAGAGCCAAAATGCTGGTACAGTGTTCCTGGTAGTGAAGCCGGTGCTTTTGAGAAGGTGATGAGAAGCAGTCTTCCTGATCTTTTTGATGCACAACCAGATCTGCTTTTTCAGCTTGTAACAATGTTAAACCCATCTGTTTTGCAAAAAAATGGAGTTCCAGTCTACAGCATAATTCAGGAGCCTGGGAATTTTGTCATTACCTTTCCCAGATCTTACCATGGCGGTTTTAATCTTGGTTTAAATTGTGCAGAGGCAGTTAATTTTGCCCCTGCTGACTGGCTACCTTATGGTGCATTTGGAGCTGATCTCTACCAGCGATATCACAAAGCTGCTGTCTTGTCTCATGAGGAGCTTCTTTGTGTAGTCGCCCAGTACAGTGACATTGATACCAGAGCATCTCCTTATTTGAAGAAAGAATTGCTTCGCATATATGATAAAGAGAAATCATGGAGAGAAAAGCTCTGGAAAAATGGTATTGTCAAATCATCTTGCATGGCTTGTCGGCAATATCCTCAATATGTTGGAACTGAAGAGGATCCGTCATGCATTATTTGCCAGCAATGTCTATATCTTTCAGCTGTTGTGTGCAGCTGCAGGCCATCTTCTTTTGTATGTCTGGAGCACTGGGAACATCTTTGTGAGTGTAAAACTGTAAAACTACGTCTTCTCTATCGTCACTCACTTGCAGAATTGCATGACTTGGCACTTTCTGTGGACAATTATACTTCTGATGATAAAGCACTGTTTAGGAATATAAGAAAGCACTCTTCATGTCCGGGCACTTTGACAAAAAAGCTTGCTACACAATGGCTTCTGCGATCTAGTGAGATTCTTCAGAATCCTTATTCAAGCGATGCTGTTGTTTCTGTGCTGAGGGAAGCTGAACAGTTTCTTTGGGCCGGTCCTGAGATGAATTCTGTTCGAGATATGGTGAAGAGTTTGATTGAAGCTCAGAAGTGGGCAGAAGGGATAAGAGATTGTTTAAGAAAAATTGAAGCCTGGTTGTGTGATCAGGACTTTGACAGAGAGAAAGTGCACCTAGAATTTGTTGATCAGCTGCTAACATTTAATTTTGCACCATGCAATGAGCCTGCTTATCATAAGTTGAAGGAATATACAGAAGGGGCTGTGTTGTTAAGTCAGGAGATTAATATTGCTTTGTCAAAGTGTTCAAAGATGTCTGAGTTGGAATCATTGCATTCTAGAGTTTGTGGCTATCCACTCTAC 2553 0.4172 MGKGRPRAVEKGVAGQSLSVSSSGSVSIPSGPVYFPTEDEFRDPLDYIYKIRPEAEPYGICKIVPPKSWKPPFALDLDFFTFPTKTQEIHKLQARPAACDSKTFELEYSRFLEDQCGKKSRKKIVFEGEELDLCKLFNAVKRYGGYDKVVREKKWGDVSRFVGPSRKITDCAKHVLSQLYSEHLYDYENFYSRLNQQTGKKGMLEDEQSDHGIRSSGSKRIRRSVDCLKVKDCKVQEEEHDQICEQCRSGLHGDVMLLCDRCDKGWHIYCLSPPLKQIPPGNWYCFNCLNSDRDSFGFVPGKQYTLEAFRRVADRSRRRWFGPGPVSRVQIEKKFWEIVEGLVGEVEVMYGSDLDTSVFGSGFPRSTDQKPEPIDSKLWDEYSSNPWNLNNLPKLKGSMLRAVHHNITGVMVPWLYIGMLFSSFCWHFEDHCFYSINYLHWGEPKCWYSVPGSEAGAFEKVMRSSLPDLFDAQPDLLFQLVTMLNPSVLQKNGVPVYSIIQEPGNFVITFPRSYHGGFNLGLNCAEAVNFAPADWLPYGAFGADLYQRYHKAAVLSHEELLCVVAQYSDIDTRASPYLKKELLRIYDKEKSWREKLWKNGIVKSSCMACRQYPQYVGTEEDPSCIICQQCLYLSAVVCSCRPSSFVCLEHWEHLCECKTVKLRLLYRHSLAELHDLALSVDNYTSDDKALFRNIRKHSSCPGTLTKKLATQWLLRSSEILQNPYSSDAVVSVLREAEQFLWAGPEMNSVRDMVKSLIEAQKWAEGIRDCLRKIEAWLCDQDFDREKVHLEFVDQLLTFNFAPCNEPAYHKLKEYTEGAVLLSQEINIALSKCSKMSELESLHSRVCGYPLYVKDVEKLERKISSTKVWLQRARSCISIKHPAAVELDVLYKLKSEIMELQVLLPEMDVIQNILSQAESCGSKCSEMLEGPMNLKNVKMLLKEWDGFMVDVPEVKLLRKYYKDAVSWVSNFNHIVETTHEREDQHNVIDELKSILGDGLSLKIHVDELPLVETELQKALCREKALQAYKSRLSLEFVQEVMKEARLLQLEGEKLFVGLSGLLAVAIPWEERAKEILSHKASFSDFRDIIRASESIFMILPSLDDMKAALLEANSWLMNSKQFLVSSTCPSDSPLKVEELQMLVSQSKLLKISFEEVRMLEIVLQNCKKWECEACSLLEDAQHTFELDDVVHGISSGLMSKVEGLIARMQSSTKSGLSLGFDFDELPKLKATCSTLRWCKKILSFCNLSPSLEDVLEATKDFPHLCDSGALLNILIRGVKWLRQALEVISGSHNSRRSKSGEVDNIIRDYQTINIPFAAIVYQLEEAIGKHKMWQEQAHQFLSLCSGKRSWVSMLKLKELGDKVAFTCRELDLISSEVEKVENWKKHCMNFVGTLVQNENSLLDVLQKMKQSLDRSLFIYGKLKDCKDECLCIYCFTDFEDQEYLTCSTCGNCYHTLCIRPLVDNSHEDYTCSSCKILKGESNYKKGTLPVGFGVKRAELKVLLELLSDAKNLCVRIDETDALNQLVEQALLCRSCLRDIVNFTSADVDNDLSTISEKLTIAIKACEVAGVSDQQDLHNFELALARHLWKIRVNRMLNSLQNPSIQEIQKHLKEGLAMEISPEDRYMLQLSKVNCLYLQWAELTKKVAVDSGAFSLDKVFKLIAEGEKLPVNVDEDLRILMARSMLYCICRKPFDPGRMIACNQCGEWYHFDCMKLPYSEEFYTCPACNPSTAGMATSLDHERLTSGKLEEPKTPSPRHTNPRKKQKMDEASVSHKMCGSEDHIEDNDCSYSRGIECLRWQNRKPFRRAAKKRVDFRRHSSFLCIHSNN 1827
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci159g0001 1827 SUPERFAMILY ARID-like 81 197 IPR036431 GO:0003677
Prci159g0001 1827 SMART PHD_3 1685 1727 IPR001965 -
Prci159g0001 1827 SMART PHD_3 1429 1474 IPR001965 -
Prci159g0001 1827 SMART PHD_3 243 289 IPR001965 -
Prci159g0001 1827 ProSiteProfiles Zinc finger RING-type profile. 1430 1474 IPR001841 -
Prci159g0001 1827 SMART cupin_9 381 547 IPR003347 -
Prci159g0001 1827 Gene3D Cupin 13 131 - -
Prci159g0001 1827 ProSitePatterns Zinc finger PHD-type signature. 244 288 IPR019786 -
Prci159g0001 1827 Pfam jmjN domain 32 65 IPR003349 -
Prci159g0001 1827 SUPERFAMILY Clavaminate synthase-like 366 564 - -
Prci159g0001 1827 SUPERFAMILY FYVE/PHD zinc finger 1420 1476 IPR011011 -
Prci159g0001 1827 FunFam Predicted protein 349 552 - -
Prci159g0001 1827 FunFam Transcription factor jumonji (JmjC) domain-containing protein 17 121 - -
Prci159g0001 1827 CDD ARID 100 188 - -
Prci159g0001 1827 ProSitePatterns Zinc finger PHD-type signature. 1686 1726 IPR019786 -
Prci159g0001 1827 MobiDBLite consensus disorder prediction 1742 1770 - -
Prci159g0001 1827 Pfam ARID/BRIGHT DNA binding domain 103 188 IPR001606 GO:0003677
Prci159g0001 1827 ProSiteProfiles Zinc finger PHD-type profile. 241 291 IPR019787 -
Prci159g0001 1827 ProSiteProfiles JmjC domain profile. 381 547 IPR003347 -
Prci159g0001 1827 ProSiteProfiles ARID domain profile. 98 192 IPR001606 GO:0003677
Prci159g0001 1827 SMART JmjN_1 30 71 IPR003349 -
Prci159g0001 1827 Pfam JmjC domain, hydroxylase 414 530 IPR003347 -
Prci159g0001 1827 MobiDBLite consensus disorder prediction 1 27 - -
Prci159g0001 1827 Pfam PLU-1-like protein 1131 1385 IPR013637 -
Prci159g0001 1827 Pfam PLU-1-like protein 1026 1175 IPR013637 -
Prci159g0001 1827 Pfam PLU-1-like protein 731 1017 IPR013637 -
Prci159g0001 1827 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1362 1479 IPR013083 -
Prci159g0001 1827 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1675 1743 IPR013083 -
Prci159g0001 1827 Pfam PHD-finger 243 290 IPR019787 -
Prci159g0001 1827 Pfam PHD-finger 1685 1728 IPR019787 -
Prci159g0001 1827 SUPERFAMILY FYVE/PHD zinc finger 1680 1730 IPR011011 -
Prci159g0001 1827 ProSiteProfiles JmjN domain profile. 31 72 IPR003349 -
Prci159g0001 1827 SMART bright_3 99 193 IPR001606 GO:0003677
Prci159g0001 1827 CDD PHD_RSF1 244 288 - -
Prci159g0001 1827 PANTHER LYSINE-SPECIFIC DEMETHYLASE 27 1153 - -
Prci159g0001 1827 Gene3D Cupin 270 553 - -
Prci159g0001 1827 Pfam C5HC2 zinc finger 624 675 IPR004198 -
Prci159g0001 1827 SMART ARID_2 95 188 - -
Prci159g0001 1827 SUPERFAMILY FYVE/PHD zinc finger 237 291 IPR011011 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci159g0001 31 95 JUMONJI Transcription Factor Family AT1G08620 55.072 4.93e-09 59.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Prci159g0001 PLU-1 1.1e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci159g0001 K11446 - gmx:100789512 2618.19