Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1591g0002 ATGGGGAGAGGGAAAATTGAAATTAAGAAGATAGAGAATTTAAATAACAGGCAGGTCACCTTCTCCAAGCGACGCAATGGGTTGCTTAAGAAGGCCAAGGAGTTGTCTGTTCTGTGTGATGCAGAGGTTGCTGTCATCATTTTCTCTAGCACCGGCAAGCTTTATGAGTTTTCTAACACAAGCATGGAGCACACCCTTTCAAGATATACCAAAGGCGTAGAATTGGATTATACAGAGCAACCCTGTGATGTGCCCCCAACTGAGGAGACTGAGCCTGATACAAACCTTCTCAAGGATGAAATTAGAAAGCTTCGTTTAGCATACTTAAGAATGATGGGGAAGGAGCTTGATGGGTTGAAATTCAAAGAGCTGCAGAACCTGGAAAATCTGAGTGAAGGGATACTATCTGTTAAAGAAAAGAAGGAACAAGTACTTCTAGATCAGCTTCGGAGGTCCAGATTACAGGAGCAACAAGCCACGCTGGAGAACGAAGCTCTGCGCAAACAAATTGAGGAGATGCAGAATAAATCAAACACAACACACTTTGTATATGTGAATGCCTTTGATAGCAGGTTCTCCATCAACAACTGTTCCAACCCCATTTTCCACTGTGCCTCCCATGAAAGAGAAGACCACTCTGACACTTGCTTGCAGTTAGGGTTGTCAACAGAATTTGGTCGGAAGAGGAAAGCACTGAAAGTTGAACCCGGCAGCGACTCTCTACGGAGTCAACTGGCCTCTGCGTCGGAAAACATTCCCTAG 762 0.4462 MGRGKIEIKKIENLNNRQVTFSKRRNGLLKKAKELSVLCDAEVAVIIFSSTGKLYEFSNTSMEHTLSRYTKGVELDYTEQPCDVPPTEETEPDTNLLKDEIRKLRLAYLRMMGKELDGLKFKELQNLENQXSEGILSVKEKKEQVLLDQLRRSRLQEQQATLENEALRKQIEEMQNKSNTTHFVYVNAFDSRFSINNCSNPIFHCASHEREDHSDTCLQLGLSTEFGRKRKALKVEPGSDSLRSQLASASENIP 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1591g0002 254 Coils Coil 132 144 - -
Prci1591g0002 254 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Prci1591g0002 254 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 165 - -
Prci1591g0002 254 Gene3D - 14 74 IPR036879 GO:0003677|GO:0046983
Prci1591g0002 254 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci1591g0002 254 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Prci1591g0002 254 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Prci1591g0002 254 FunFam MADS-box transcription factor MADS-MC 13 82 - -
Prci1591g0002 254 Pfam K-box region 92 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci1591g0002 254 Coils Coil 124 130 - -
Prci1591g0002 254 Coils Coil 150 177 - -
Prci1591g0002 254 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Prci1591g0002 254 SUPERFAMILY SRF-like 2 83 IPR036879 GO:0003677|GO:0046983
Prci1591g0002 254 CDD MADS_MEF2_like 2 72 IPR033896 GO:0000977|GO:0045944
Prci1591g0002 254 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Prci1591g0002 254 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Prci1591g0002 254 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1591g0002 1 248 MADS-box Gene Family AT5G13790 47.082 3.37e-64 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Prci1591g0002 K-box 6.4e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1591g0002 - - gmx:100792278 337.035