Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Prci157g0001 | ATGTCTTTCACTGGAACTTTGGATAAATGCAAGGCTTGTGACAAGACTGTCCATGTGGTGGACATGATGACCCTTGAAGGTACTCCTTACCATAAATCGTGCTTCAAGTGCAGCCACTGCAAGGGATTTCTTTCGATGAGCAGCTACTCCTGGATGGATGGCGTCCTCTACTGCAAACCCCATTTTGAGCAGCTTTTCAAGGAATCTGGCAATTTCAGCAAGAACTTTCAGTCAGCAAGGTCCGTTGAGAAGAATGATCTGTCCAGAACTTCAAGCAAGCTGTCTTCCATATTCAGTGGGACCCAGGACAAGTGCTCCGTGTGTGGAAAGACAGTGTATCCTCTGGAGAAGATGACGCTGGAAGGAGAGTGCTTCCACAAGTCGTGCTTCAGGTGTGCTCATGCGGGGTGCCCTCTGACCCATTCGTCCTACGCCGCCCTGGACGGCGTCCTGTATTGCAGGCACCACTTTGCTCAGCTATTCATGGAGAAAGGAAATTACAACCATGTCCTCCAAGCTGCCGCCCACAAGCGCAGTGCCAGCTCTGGCACTCCTCCTCCTGAACCTGCCACTGAAGACGATGCCCCTAGCCCTCATCACGAGGACGACAAGAAGGACGACCCCAAAGATGACCCTGAAGAAGAACAGCATCACTCTTAG | 660 | 0.5152 | MSFTGTLDKCKACDKTVHVVDMMTLEGTPYHKSCFKCSHCKGFLSMSSYSWMDGVLYCKPHFEQLFKESGNFSKNFQSARSVEKNDLSRTSSKLSSIFSGTQDKCSVCGKTVYPLEKMTLEGECFHKSCFRCAHAGCPLTHSSYAALDGVLYCRHHFAQLFMEKGNYNHVLQAAAHKRSASSGTPPPEPATEDDAPSPHHEDDKKDDPKDDPEEEQHHS | 219 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Prci157g0001 | 219 | Gene3D | Cysteine Rich Protein | 6 | 74 | - | - | |
| Prci157g0001 | 219 | Gene3D | Cysteine Rich Protein | 99 | 169 | - | - | |
| Prci157g0001 | 219 | ProSiteProfiles | LIM domain profile. | 103 | 163 | IPR001781 | - | |
| Prci157g0001 | 219 | PANTHER | OS06G0237300 PROTEIN | 6 | 81 | - | - | |
| Prci157g0001 | 219 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 36 | 76 | - | - | |
| Prci157g0001 | 219 | ProSiteProfiles | LIM domain profile. | 8 | 68 | IPR001781 | - | |
| Prci157g0001 | 219 | FunFam | LIM domain and actin-binding 1 | 99 | 169 | - | - | |
| Prci157g0001 | 219 | MobiDBLite | consensus disorder prediction | 193 | 219 | - | - | |
| Prci157g0001 | 219 | ProSitePatterns | LIM zinc-binding domain signature. | 10 | 44 | IPR001781 | - | |
| Prci157g0001 | 219 | FunFam | LIM domain and actin-binding 1 | 4 | 74 | - | - | |
| Prci157g0001 | 219 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 97 | 130 | - | - | |
| Prci157g0001 | 219 | SMART | lim_4 | 9 | 61 | IPR001781 | - | |
| Prci157g0001 | 219 | SMART | lim_4 | 104 | 156 | IPR001781 | - | |
| Prci157g0001 | 219 | Pfam | LIM domain | 105 | 160 | IPR001781 | - | |
| Prci157g0001 | 219 | Pfam | LIM domain | 10 | 65 | IPR001781 | - | |
| Prci157g0001 | 219 | MobiDBLite | consensus disorder prediction | 174 | 219 | - | - | |
| Prci157g0001 | 219 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 3 | 35 | - | - | |
| Prci157g0001 | 219 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 131 | 171 | - | - |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | LIM | Prci157g0001 | LIM | 1.7e-10 | CL0167 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Prci157g0001 | - | K09377 | hbr:110669517 | 338.576 |