LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Prci1578g0002	ATGGAGTCCATTTGCCCAATAGACTCGCGGTGTGCCACTGAAATTGCAGCTCTTCTCAGTCCTCCGTCACCTCTTCAAGTCCAGGAATATTATCACAAGCTTTTATCTGCGAGGAAGTGCAGTAGTATCATAGTCCAACAGGATGAAAATTTTGGAAAGGGTGTGTATGCTGCCATAGACTTCAATGACGCAGAGCTTGTTCTGAAAGATCAAATGCTAGTTGGGGTTCAACACTCTTCCAACAAGATTGATTGTTTTGTCTGTAGTTCCTGCTTTCGTTTTCTTGGTTCTATAGAACTTCAAATCAGAAGGAGGCTTTACATGCAAGAAGTAGGGGCATCTGAGAGTCATAATTGTGATATGAGTGACTCTTCAAACGCATCAAAATACAATAATGACACATATTCATCTGATGGAGAAGAAAGTTCATATAAAAAAAGGGAGGATGGCGCTGGTGAATGTAGTTTTGGTAGTCCTGAAGCTAAAGTTCATGTCCCTGAAGGAGTTGTTCAATCATTAATGAACGGCCACATGATGCTTCCTTACTCCAACAAGTTCTCCTTGCCACCAGCTGTTCCATGCCCTGGTGGATGTGGAGAGTCATTCTACTGCAGCACATCATGTGCAGAGGCTGATTGGAAATCCTGTCATTCCTTGATTTGTACTGGTGAGAAGTCTGATACAGCACGTAGGGAGGCACTTCTAAAATTCATCAAACATGCTAATGAAACAAACGATATATTCCTCCTTGCTGCAAAGGCTATTTCTTCCACCATTGTAAGGTACCACAAGTTAAAAGAAAGCTGTCTTTTAGAGCAAGGAAAACATGATACGTCACATCTTTCAAACCATTGTGATCTCACTTTTCTTTTGGAGTCTTGGAGACCTATAGCAATGGGACACAAGAGAAGGTGGTGGGACTGCGTTGCATTGCCAGATGATATTAATTCTTCTGATGAAGTTGCATTCAGGATGCAAATAAGAGATCTGGCATTTGAGTCACTCCAACTTCTAAAGAAAGCTATATTTGACAGAGAGTGTGAACCATTATTCTCCCTGGAAATATATGGGCACATCATTGGCATGTTTGAGCAAAACAATCTTGATTTGGTAGTAGCTTCTCCTGTGGAGGATTACTTTTTGTACATTGACAATCTAACATATCCTGAAAAGGAAAAAGCTGAGGAAATTACACAACCAATTCTGGATGCTCTTGGTGAAGACTATTCAATTTGTTGCCAGGGAACTGCTTTTTTTCCTTTGCAAAGCTGCATGAACCATTCTTGTTGTCCTAATGCCAAGGCATTCAAAAGAGAGGAGGATAGAGATGGTCAAGCAACAATAATTGCATTGACGTCGATTCGTAAAGGAGAAGAGATAACCATCTCATATGTCGATGAGGATCTTCCATTTGAAGAGAGACAGGCATCCCTTGCAGATTATGGTTTCAGATGTAGGTGCCCAAAGTGCATTGAAGAACAACCATAG	1488	0.4106	MESICPIDSRCATEIAALLSPPSPLQVQEYYHKLLSARKCSSIIVQQDENFGKGVYAAIDFNDAELVLKDQMLVGVQHSSNKIDCFVCSSCFRFLGSIELQIRRRLYMQEVGASESHNCDMSDSSNASKYNNDTYSSDGEESSYKKREDGAGECSFGSPEAKVHVPEGVVQSLMNGHMMLPYSNKFSLPPAVPCPGGCGESFYCSTSCAEADWKSCHSLICTGEKSDTARREALLKFIKHANETNDIFLLAAKAISSTIVRYHKLKESCLLEQGKHDTSHLSNHCDLTFLLESWRPIAMGHKRRWWDCVALPDDINSSDEVAFRMQIRDLAFESLQLLKKAIFDRECEPLFSLEIYGHIIGMFEQNNLDLVVASPVEDYFLYIDNLTYPEKEKAEEITQPILDALGEDYSICCQGTAFFPLQSCMNHSCCPNAKAFKREEDRDGQATIIALTSIRKGEEITISYVDEDLPFEERQASLADYGFRCRCPKCIEEQP	495

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Prci1578g0002	495	SUPERFAMILY	SET domain	38	490	IPR046341	-
	Prci1578g0002	495	SUPERFAMILY	HIT/MYND zinc finger-like	193	222	-	-
	Prci1578g0002	495	MobiDBLite	consensus disorder prediction	139	153	-	-
	Prci1578g0002	495	MobiDBLite	consensus disorder prediction	116	159	-	-
	Prci1578g0002	495	MobiDBLite	consensus disorder prediction	116	138	-	-
	Prci1578g0002	495	Gene3D	-	181	223	-	-
	Prci1578g0002	495	ProSiteProfiles	SET domain profile.	41	465	IPR001214	GO:0005515
	Prci1578g0002	495	PANTHER	HISTONE-LYSINE N-METHYLTRANSFERASE ATXR2	14	494	IPR044237	GO:0008168
	Prci1578g0002	495	CDD	SET_SMYD	404	490	-	-
	Prci1578g0002	495	Gene3D	SET domain	386	494	IPR046341	-
	Prci1578g0002	495	Pfam	SET domain	398	464	IPR001214	GO:0005515

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	SET	Prci1578g0002		SET	1.8e-10	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Prci1578g0002	-		-	pcin:129300428	1021.54