LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Prci1564g0001	ATGCTAGAGACTGGTTATCTGCTCGCAAGATTGACCAAGGAAATAATTGAAACATACCAAATATGCAATCCGGAGTTCAAGTATTCTGAAGAGCTAAATCCAAAAAGATATTTGACCAGCCCGTCAGTTGGAGTGCTTAATGATGGCTTTGATAATGTTAACTCAGATCTTATATTGACAGTGAACTTTGTCTTGGTCAATTTTGAGAGAAATAGAAGATATCTTGTCAAAGATGTCCTTGGCCATGGGACATTTGGACAAGTGGCTAAGTGTTGGGTTTCAGATACCAGCAGCTATGTTGCTGTGAAGATCATCAAAAATCAACCTGCATACTATCAACAGGCATTGGTTGAAGTATCTATTTTGAATACGTTAAACAAGAAGTATGATCCTGAGGATAAGCATCACATTGTTCGTATATATGATTACTTTTTATATCAACGGCATTTGTGTATATGCTTCGAACTTTTGGACACAAACTTGTATGAGCTTATCAAGTTGAACAATTTTAGGGGGTTATCTTTGAGTATTGTTCAGTTGTTCTCTAAGCAGATATTACATGGATTAGCTCTATTAAAAGATGCTGGCATCATTCACTGTGATCTGAAGCCAGAAAACATTCTTCTATGTACAAGTGTGAAGCCAGCAGAAGTCAAGATTATTGACTTTGGATCGGCATGCATGGAAGACCGTACTGTCTACTCCTATATTCAGAGTCGATATTATAGGTCTCCTGAGGTTCTTCTTGGATATCAATACACAACAGCTATTGATATGTGGTCCTTTGGGTGCATAGTGGCTGAATTGTTTCTTGGATTACCATTATTTCCTGGTGCTTCTGAATTTGATCTTTTGAGGAGGATGATTGAAATTCTTGGGGGACAACCGCCTGATTATGTACTGAGGGAGGCCAAAAACACTGGTAAATTTTTCAAGTGTATTGGGAATCTCCAGAATGGAGAGAACAGCGAGATTCCATCACATGGAAGAAGTTCTTATCAAGCATTGACTGAGGAAGAATATGAAGCTAGAGAATTGAAGAAGCCATCAATTGGGAAAGAGTATTTCAATCATATGAATCTTGAAGAAATTGTTACCCACTATCCCTATAGGAAAAACTTGCCGGAGGAAGATATTCTTAGAGAGAGTCAAATACGATTGGCATTAATTGATTTTTTGAGAGGGCTAGTTGAATTTGATCCTGCAAAGCGCTGGTCACCCTTCCAGGCTTCAAGGCACCCTTTTGTGACAGGGGAACCTTTTACCCATCCTTATGAGCCTCCTCCAGAAACCCCTCGTGTGGCGGTTGTTCAAGCTGTCAAAGTGGATCATCACCCTGGTGGAGGGCACTGGTTTGCTGCTGGTTTATCACCTAATGTTCCTAGCAAAAGTAGGCCTTCACTATATAGCAGCTTGCATTTCCAGATGGTGCAATATCCACCTGCTAACAGCTACGGCAGTGTGGGAAGCCATGGTAGCTATAATGATAGTGTTGGGCTTGTTGGAAGTAGCTATGGAAGTTATGGAGAAAGCAGCAGTAACATGTTTGCATACTGTTCGCCTGTTGGTCCATCTGGTATTCATTTGCTTGGTCATGGCAGTACCTCAATGCTTGGAAATAGTCCTGATGCAAGGAGAAGGGTTGTTCCATACCAGGCAGGGAGTGCTCGAGGCATAAGCCCATCTGCTGGAACTTTCACCCATTTGCCCCTTGGTGCGAGTCCCTCACAATTTACTCCTCAGTCCTATACACAAGTTTCAGCAAGCTCTCCTGGACACTATGGACCTACTTCTCCTGCAAGAGGCACTTCTCATGGATCACCGTTGGGGAAGACATCTACCATTAGCCAGTTAATGAAGAAAAAATGGGGATGTTCTGGAAGTCATCAAACTCAAGATATAACATTTTCTCCACATTGGCAAGTTCACTGTCCTACAGCTCCATCTATGGTGAAGGAACAGCTCAATTTCTTAGCAGCTCGCCATCTTATCTGCAATCAAATTGATGATGCTGCAAGCCGGAAGCAGCGCGGAGGTGGAAACTAA	2046	0.4194	MLETGYLLARLTKEIIETYQICNPEFKYSEELNPKRYLTSPSVGVLNDGFDNVNSDLILTVNFVLVNFERNRRYLVKDVLGHGTFGQVAKCWVSDTSSYVAVKIIKNQPAYYQQALVEVSILNTLNKKYDPEDKHHIVRIYDYFLYQRHLCICFELLDTNLYELIKLNNFRGLSLSIVQLFSKQILHGLALLKDAGIIHCDLKPENILLCTSVKPAEVKIIDFGSACMEDRTVYSYIQSRYYRSPEVLLGYQYTTAIDMWSFGCIVAELFLGLPLFPGASEFDLLRRMIEILGGQPPDYVLREAKNTGKFFKCIGNLQNGENSEIPSHGRSSYQALTEEEYEARELKKPSIGKEYFNHMNLEEIVTHYPYRKNLPEEDILRESQIRLALIDFLRGLVEFDPAKRWSPFQASRHPFVTGEPFTHPYEPPPETPRVAVVQAVKVDHHPGGGHWFAAGLSPNVPSKSRPSLYSSLHFQMVQYPPANSYGSVGSHGSYNDSVGLVGSSYGSYGESSSNMFAYCSPVGPSGIHLLGHGSTSMLGNSPDARRRVVPYQAGSARGISPSAGTFTHLPLGASPSQFTPPXSYTQVSASSPGHYGPTSPARGTSHGSPLGKTSTISQLIXKKKWGCSGSHQTQDITFSPHWQVHCPTAPSMVKEQLNFLAARHLICNQIDDAASRKQRGGGN	683

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Prci1564g0001	683	ProSiteProfiles	Protein kinase domain profile.	74	416	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Prci1564g0001	683	PANTHER	DUAL SPECIFICITY PROTEIN KINASE	46	419	-	-
	Prci1564g0001	683	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	197	209	IPR008271	GO:0004672\|GO:0006468
	Prci1564g0001	683	Pfam	Protein kinase domain	76	416	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Prci1564g0001	683	MobiDBLite	consensus disorder prediction	570	615	-	-
	Prci1564g0001	683	Gene3D	Phosphorylase Kinase; domain 1	39	154	-	-
	Prci1564g0001	683	ProSitePatterns	Protein kinases ATP-binding region signature.	80	103	IPR017441	GO:0005524
	Prci1564g0001	683	CDD	PKc_YAK1	74	416	-	-
	Prci1564g0001	683	SUPERFAMILY	Protein kinase-like (PK-like)	68	435	IPR011009	-
	Prci1564g0001	683	SMART	serkin_6	74	416	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Prci1564g0001	683	FunFam	Dual specificity tyrosine-phosphorylation-regulated kinase 1A	37	153	-	-
	Prci1564g0001	683	Gene3D	Transferase(Phosphotransferase) domain 1	155	417	-	-

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Prci1564g0001	73	318	MAP Kinase Gene Family	AT3G18040	33.463	1.66e-32	130

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_DYRK-YAK	Prci1564g0001		Pkinase	1.2e-49	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Prci1564g0001	K18670		-	gmx:100792777	1099.35