Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1543g0001 ATGAATGCACTGACTCTCTGCTTCTTTCCATTCACCTCTTATATAAAATCTCTCTCCTGTCATCTCTCTCCCATCAATCTTTACTCTCAAATCAAAATCCTCACTTTCACTGTTTCCTTCACCGTCTTCTTTTCCCTTCAGCCTCTACAAATGGTTCTGGGATGGCGAAGAAGAAAGAAAGGTCGCCGGAACGACAAGCTCCACCTCGAGCTCGTCATTCCCAACCACTTCCGATGTCCGATTTCGCTTGATTTGATGAAAGATCCCGTCACATTGTCCACCGGAATCACCTACGACCGTGAGAGCATCGAAAGGTGGTTCCTTGACGGCAATTTCACTTGCCCTGTTACCAATCAGGTTCTCAGGAGCTTCGATCTCATTCCCAATCATACTCTTCGCATAATGATTCAAGACTGGTGCGTCGAGAATCGACAGCACGGGGTCGAGAGGATCCCCACCCCGAGAATTCCCATTTCTCCAATCGAAGTCGCAGAGCTTCTTCTTCATTTGACATCGTCGGCGAGACGTTTGGATCAGTATGGGTGTCTCGGATTGGTTCAGAAAATGGAGAAATGGGGTGAAGAGAGCGAGAGGAATAGGAAATGTGTGGTTGAGAATGGAGCTACAGGTGCTCTGGCCTCTGCTTTTGATTCGTTCGCGAATGATTCCGTTGAGAAGAATCTGAGTGTTCTGGAAGAGATTCTTTCTGCTCTGAATTGGATGTTCCCGCTTCAAATGGAAGCCCAGAAATCTTTGGGATCTCAAGCTTCGTTACGTTGCATGGTTTGGTTTCTGAAGCATCAAGATCTCGCAGGGAAAGAGAAGTCCATTGTTGCTCTCAGAGAGCTTCTCTCTTTCGAAAATGAAGATCATTTGAATGTTCTGGCAGATATTGAAGGAGTCAACGAACTGTTGGTGGAATTTATCACCAAAAGACTGAGTCCAACCATCACAAAAGCTTCATTAGCTGTGGTTTTCTATTTGGTCTCATCATCTTCTTCCTCGAGCAACAAGATGAAACAGAGATTCATCCAACTAGGATTGGTCTCTTCTTTACTGGAGATCCTTCTGGACTCAGAAAGAAGCCTCTGTGAGAAAGCTCTGGCAATTTTTGACTCACTCTGCTCTTCCGCGGAAGGCAGAGAAAAAGCTTACGGTAACGCCTTGACGATTCCTGTGTTGGTGAAGAAGATACTGAGAGTTTCAGCAATGGCAACAGATAGCTCTGTTTCTGCCATATGGAAGCTGTGCAAGAATAATAATGGAGAAGACAAAGAAGAAGAAGAAGAAGGACAAAACGTTGTGATTGAGGCACTGCAAGTTGGTGCATTTCAGAAGCTGCTGTTAGTGTTGCAGATCGGTTGTGGTGATGAAACGAAGGTGAAAGCAACAGAGCTTCTCAAACTTCTGAATCAATACGGGTCAGGCGTGGAGTGTGTAGATTCAGATTTCAAGAACCTCAAGAGATCACATTAA 1476 0.4512 MNALTLCFFPFTSYIKSLSCHLSPINLYSQIKILTFTVSFTVFFSLQPLQMVLGWRRRKKGRRNDKLHLELVIPNHFRCPISLDLMKDPVTLSTGITYDRESIERWFLDGNFTCPVTNQVLRSFDLIPNHTLRIMIQDWCVENRQHGVERIPTPRIPISPIEVAELLLHLTSSARRLDQYGCLGLVQKMEKWGEESERNRKCVVENGATGALASAFDSFANDSVEKNLSVLEEILSALNWMFPLQMEAQKSLGSQASLRCMVWFLKHQDLAGKEKSIVALRELLSFENEDHLNVLADIEGVNELLVEFITKRLSPTITKASLAVVFYLVSSSSSSSNKMKQRFIQLGLVSSLLEILLDSERSLCEKALAIFDSLCSSAEGREKAYGNALTIPVLVKKILRVSAMATDSSVSAIWKLCKNNNGEDKEEEEEGQNVVIEALQVGAFQKLLLVLQIGCGDETKVKATELLKLLNQYGSGVECVDSDFKNLKRSH 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1543g0001 491 CDD RING-Ubox_PUB 74 126 IPR045210 -
Prci1543g0001 491 ProSiteProfiles U-box domain profile. 72 146 IPR003613 GO:0004842|GO:0016567
Prci1543g0001 491 SMART Ubox_2 76 139 IPR003613 GO:0004842|GO:0016567
Prci1543g0001 491 SUPERFAMILY ARM repeat 169 470 IPR016024 -
Prci1543g0001 491 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 56 151 IPR013083 -
Prci1543g0001 491 PANTHER WDSAM1 PROTEIN 70 479 IPR045185 GO:0061630
Prci1543g0001 491 Gene3D - 162 468 IPR011989 -
Prci1543g0001 491 SUPERFAMILY RING/U-box 72 149 - -
Prci1543g0001 491 FunFam RING-type E3 ubiquitin transferase 73 144 - -
Prci1543g0001 491 Pfam U-box domain 73 144 IPR003613 GO:0004842|GO:0016567
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1543g0001 70 489 U-box Gene Family AT5G37490 47.170 2.06e-120 358
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1543g0001 - - gmx:100794340 606.675