Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1539g0003 ATGTCTTCTTCCCGGCGCTCATCCTCCAAATCCAAATCCAAGTCTAAATACGAAGTTAATTGGACAAACGATGTGTTCCTGAGTTTCAGAGGAGAAGACACTCGGAAGGGTTTCATTTCTCATCTTCATTCATCTCTCAGTCATGCTGGAATTCACGCTTTTCAGGATGAAGATCACGAGTCATTAGAAAGGGGCGATGTGATTGCTGACGAACTGCATGAAAGCATCTCCAGCTCAACAATTTCAATCGTTGTTTTCTCAATCAACTATGGCGGCTCCGAATGGTGCTTAGGAGAACTGGAAAAAATCATGGAATGTCACAGAACTATCGGTCAGGTGGTTCTGCCTGTGTTCTATGATGTTGATCCGTCAGATGTACGCAAACAGAGAGGTCGTTTTGGGGAAGCATTCAATCGATGTTTACTGTACACCAGTAATGAGAAGATGTGGCGTTGGAGGCATGCTCTCACTGCAGCTGCCAATCTTGCCGGATTTGATTTGAAGAATTTCAGGAGTGAACGCTTGGTGATCAAGAATATTACTGACTCTATTTTGAGAATACTAGATAGCACCTACTTGTTTGTTGCTGACCATCCAGTGGGAGTAGATTCTCGTGTGCATGACATGATTGAACTGTTAACTGGTCCCTCAACTAAAGTTCTAATTGTTGGAATTTGGGGGATGGGAGGGATGGGCAAAAGCACTATAGCCAAGGCTGTTTACAATGAAATGTGTCATCATTTTGAGGGGAGCAGTTTCCTTGAAAATATCAGAGAAGTTTGGGAGCAAGACAATGGTCAAATATATTTGCAACAACAACTTCTTTCAGATATTCTTAAGACAGAAAAGATGAAATTTCATAGCTCTGCACGGGGCAAATTGCTGTTGAAAGAAAAACTTTGCCATAAGAAGACACTTGTTGTACTTGATGATGTGAATAATTTGGACCAGCTTAATGCATTGTGTGGAAGCCATGAATGGTTTGGTCCAGGAAGTAGATTAATCATTACAACTAGAGATGAGCATCTACTCAATGTCCTTAAAGTGGATAGCATATATAGAATGAAAGACATGAACACAAAGCGAAGCCTAGTAACTGTTGATATGAAAAATAGGCTTGGAATGCATGATTTGCTACGAGACATGGGAAGAGAAATCATTCGTAAAAAATCACCAAAAGAGCCTGAGAAGCGTAGTAGATTATGGTTCTATGAAGATGCCCATAGTGTGCTCAAGAAACATACTGGGACTATATCCATTGAGGGATTGGCTTTGAAGTTGCCCAGAAATAATAGAGTTTGTTTAAGCACCGAAGCATTTAAGGAGATGAAGAAGCTGAGATTGATTCAACTTGATCATGTTCAACTGGAGGGAGATTTTGAATGTCTTTCGAAAGACCTCAAATGGCTCAGTTGGCGTAGGTTTCCATTGAGATATATTCCTGGCACTTTTCATCAAGGAAGTTTAGTTGCTATTGACTTAAAATACAGCAATCTCTATCAAATTTGGAAGGAACCCCAGTTGCTCAGCAAGTTGAAGATCCTCAATCTGAGTCATTCCTTTTACTTGATCCAATCTCCTGATTTCTCAAATCTGCCTCATCTTGAAGTTCTAATACTCAAATATTGTTCAAGTTTGTCTATGGTGCACCACTCCATTGGAGATCTAAAAAATCTTACTTTGGTAAACTTGAAGGGCTGCACAAGCCTTACTAATCTCCCAACAACTATCTATAAGTCAAAATCTTTGAAGGTTCTCCTCCTGTCTGATTGTTTAAAGATTGATAAGTTGGAGGAAGACATAGGGCAGGTGCAATCTTTGACTACTCTGATTGCAAATAACACAGCAATAAGACAAGTTCCCTATTCAATTGTAAGATTGAAAAACATTGGGTATATATCTGTTTGTGGCTTTGAAGGTTTAACAGAAGCACAAGCTAATAGTTTTCATGATCTACCATCAATGCTTACTGGCCTTTCAAAGACTCGAAGCCTTCAGATTGAATCCTTCTCAGAGCTACAGCTTACTCAAGATATAGAAAGAGTTTTAGATTCAATATACGCCACAAATGGTGTTGAATTGGAAACCCCAAATGCATCACAAGTTTCATGCATGGAAACATCTACTTCAACTCCTTGTGGCAATCAGTTTCACATTTCAAGTTCGGAAAATTCCTTGAGATCCATTTTGATTCAAATGGGACAGAGCAGCCAAGTCACAATAACTCTTAGTGAGGCAATTTCGCAGGTATTAACTACTAACAGGTTTGGTGATTGTTTGCTCCCTGGTGACAAATATCCTTATTGGTTATCTTACAAGGATGAAGGACCTTCAGTATTTTTTGAAGTTCCAAATCTTACAGGCTATAGCTTGAGAGGAATGACTTTGTGCATTATATATTCGTCTTTCCTGAACAAAGTAGCATTTGGATATCCAGTTGGTGTTCTGTTAATAAATTTCAGCAAGAGCACCATCCAGCTTTACAAGCGAGAAACACTAACATCCTTTGGGGATGAAGAATGGCAGGACATAACATCAAAGTTAGAACCTGGTGACAAAGTTGAGGTTATTGTAGTTTTTGGGTACAGATTCACTGTAAAGAAGACAGCAATGTATCTGATATATGCTGAATCAATGGAAGAAAACACAGTGCCTACCCAAGAACCTGATAAGAATGTTGTTTCTTCTAGCAGACATGAAATTACAAGGGTCGAGTCTAAGGCATTCCAATGTGATGATGAAGAGGAGGTACCTTTAAGTAGACCCAGAAAAACAATGAAAATGTGCAAGCTTCTTGAACCATAA 2805 0.3929 MSSSRRSSSKSKSKSKYEVNWTNDVFLSFRGEDTRKGFISHLHSSLSHAGIHAFQDEDHESLERGDVIADELHESISSSTISIVVFSINYGGSEWCLGELEKIMECHRTIGQVVLPVFYDVDPSDVRKQRGRFGEAFNRCLLYTSNEKMWRWRHALTAAANLAGFDLKNFRSERLVIKNITDSILRILDSTYLFVADHPVGVDSRVHDMIELLTGPSTKVLIVGIWGMGGMGKSTIAKAVYNEMCHHFEGSSFLENIREVWEQDNGQIYLQQQLLSDILKTEKMKFHSSARGKLLLKEKLCHKKTLVVLDDVNNLDQLNALCGSHEWFGPGSRLIITTRDEHLLNVLKVDSIYRMKDMNTKRSLVTVDMKNRLGMHDLLRDMGREIIRKKSPKEPEKRSRLWFYEDAHSVLKKHTGTISIEGLALKLPRNNRVCLSTEAFKEMKKLRLIQLDHVQLEGDFECLSKDLKWLSWRRFPLRYIPGTFHQGSLVAIDLKYSNLYQIWKEPQLLSKLKILNLSHSFYLIQSPDFSNLPHLEVLILKYCSSLSMVHHSIGDLKNLTLVNLKGCTSLTNLPTTIYKSKSLKVLLLSDCLKIDKLEEDIGQVQSLTTLIANNTAIRQVPYSIVRLKNIGYISVCGFEGLTEAQANSFHDLPSMLTGLSKTRSLQIESFSELQLTQDIERVLDSIYATNGVELETPNASQVSCMETSTSTPCGNQFHISSSENSLRSILIQMGQSSQVTITLSEAISQVLTTNRFGDCLLPGDKYPYWLSYKDEGPSVFFEVPNLTGYSLRGMTLCIIYSSFLNKVAFGYPVGVLLINFSKSTIQLYKRETLTSFGDEEWQDITSKLEPGDKVEVIVVFGYRFTVKKTAMYLIYAESMEENTVPTQEPDKNVVSSSRHEITRVESKAFQCDDEEEVPLSRPRKTMKMCKLLEP 934
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1539g0003 934 PRINTS Disease resistance protein signature 222 237 - -
Prci1539g0003 934 PRINTS Disease resistance protein signature 530 546 - -
Prci1539g0003 934 PRINTS Disease resistance protein signature 299 313 - -
Prci1539g0003 934 SUPERFAMILY L domain-like 395 681 - -
Prci1539g0003 934 Pfam TIR domain 24 185 IPR000157 GO:0007165
Prci1539g0003 934 Gene3D Ribonuclease Inhibitor 419 701 IPR032675 -
Prci1539g0003 934 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 24 348 IPR044974 GO:0006952
Prci1539g0003 934 Gene3D - 195 353 IPR027417 -
Prci1539g0003 934 Gene3D - 17 194 IPR035897 -
Prci1539g0003 934 FunFam Disease resistance protein (TIR-NBS-LRR class) 19 190 - -
Prci1539g0003 934 SMART till_3 22 162 IPR000157 GO:0007165
Prci1539g0003 934 ProSiteProfiles TIR domain profile. 21 188 IPR000157 GO:0007165
Prci1539g0003 934 Pfam NB-ARC domain 206 389 IPR002182 GO:0043531
Prci1539g0003 934 SUPERFAMILY Toll/Interleukin receptor TIR domain 14 165 IPR035897 -
Prci1539g0003 934 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 188 365 IPR027417 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1539g0003 362 627 WRKY Transcription Factor Family AT4G12020 33.333 4.17e-28 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1539g0003 - - gmx:100808753 544.658