Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1531g0001 ATGGGTGATGTTGAAATTCCCAATTGGCTAAAAGCCTTGCCATTGGCTCCTGAATTTCGCCCAACTGATACCGAATTCGCCGACCCAATTGCTTACATTTCAAAGATTGAGAAAGAAGCTAGCGCCTTTGGCATATGTAAGATTATTCCACCATTACCGAAGCCTTCAAAAAGATATGTCTTCTCGAATTTGAACAAGTCTCTTTTGAAGAGCCCGGAGTTGGCGTCAGACATTAATTCAATTGGAGTTAGTAATTGTTTGAAAATGGTTTCTGGGGATAGTGGTAATGATGGGGAGGCACGGGCTGTGTTTACCACAAGGCATCAAGAACTGGGGCAGAGTATTAAAAGAACCAAAGGAACAATTCAAATCCCAATTTCAGGTGTTCATAAGCAAGTGTGGCAGAGTGGGGAAATTTATACACTTGAACAGTTTGAGTCTAAATCAAAGGCTTTTGCAAGAAGTGTACTAGGTATGGTTAAGGAGGTTTCTCCTCTGGTTATAGAGGCTATGTTTTGGAAGGCAGCTTCAGAGAAGCCAATATATGTGGAGTATGCCAATGACATGCCTGGGTCTGCTTTTGGAGAATCCAAGGGTCAATTTCGTTATATTCATAGGAGGAGAAGGAAAAAGGCTTATTATCAAAGGAGTCTAGATGCCAAGGACTGCCAAGAACCCAAAATGGAAAGTATAAGAGATGCCCAGACTGTTGAAAGTAAGGATGCTTCTGCCCATAATCATGCTGACACATGGTCACAGACATCAAATTCAACTTCAACTCTGTCAACATTTTCACCAAATGAAGTCCTAAATTCAATTAGGCAGAAGAGTTCTGATTCCAGCAATGAGATGGAAGGTACTGCTGGTTGGAAGCTTTCAAACAGTCCTTGGAACTTACAAGTTATTGCACGTTCACAGGGCTCGATAACTCGTTTCATGCCGGATGATATTCCTGGTGTTACTTCCCCCATGGTATACATTGGCATGCTGTTCAGTTGGTTTGCTTGGCATGTAGAGGATCATGAACTTCACAGCATGAATTTTCTTCACATTGGCTCGTCAAAGACCTGGTATGCTGTTCCTGGAGATTATGCCTTTGCTTTCGAGCAACTCGTCCGCACTGAGGCTTATGGTGGTAATGTTGACCACTTAGCTGCTCTGACACTATTGGGGGAGAAGACAACCCTTCTATCACCGGAGGCAGTTGTTGCATCTGGGATCCCTTGTTGCAGGTTGACGCAGAACCCTGGAGAATTTGTTGTGACCTTTCCAAGGGCTTATCATGTAGGATTCAGCCATGGTTTTAACTGTGGGGAAGCTGCTAACTTTGGAACTCCACAATGGCTCGCAGTAGCCAAGGAAGCTGCAGTGCGTAGGGCTGCAATGAATTATCTTCCCATGCTTTCTCATCAGCAACTGCTTTACTTACTGACCATGTCTTTTGTTTCAAGAGTCCCAAGAACATTATTGCCAGGTGTCCGAAGTTCCCGTCTAAGAGACCGCCAGAAAGAAGAAAGAGAATTGTTAGTAAAAAGATCTTTTATAGAAGATATGCTGCAAGAAAACAATCTGCTATCCATTCTACTTGGAAAGCAATCAACTTATCATGCTGTTTTATGGAATGCTGATTTACTCCCAGATTCAAGCAAGGATTCTCAGTTGCCTGACTTGACTTCTACAACTGGAAGCTTTATGGCAGACAACATGTCAAATTTGTTTTCTGCAGATAAGAGCAACCACAGTTGTCTCTTTGATGAAATGAGCTTGTATTTGGAGAATCTGACTGATTTTTATATGGGTGATGACAGTCTTCCATGTCACTTCCAAACTGATTCAGGAGCATTGGCTTGTGTGGGTTGTGGAATTCTTGGTTTTCCATTCATGACCGTGGTACAACCATCGGAGAGATCAGCAATGGAACTTTTGCCGGTCTCAGGGAATGCTCTCTCTGTTATTGATCTAACTTTAACGAATGAACCATCAAAACTATCATTAATGAACTGTGACAAGGGTTGGAACACCTCTTGTAAATTTTTGAGGCCACGAATTTTCTGCCTGGAGCATGCTGCTCAGATTATTGAGATGCTGCAGTGTAAAGGTGGAGCTAGCGTGCTTGTCATTTGCCATTCAGACTACCAGAAAATAAAGGCACATGCCAGGGCAGTAGCAGAGGAGATAGGCTGCTCTTTTGATTATAATGAAGTTCCGTTAGATACTGCATCCCCTGAAGATTTGACTTTGATAGATCTTGCAATTGACAGTGAAGAACACGATGAATGTGAAGAAGACTGGACAGCTAAACTAGGAATTAACCTGCGGTATTGTGTCAATGCAAGAAAGAACTCTCCATATAAACAAGCTCCTTTCAAATTGGCACTAGGAATGCTGTTCCCTGAGAAATTTCCTGATTCAGATGTCTTATCTGTAAATTGGCAATCAAAGAGATTTCGCTCCAGAAGATTGAAGTATTTAGCTCAGGCAAAAGCATGTGATGAGATTCAGAGAAAGGAGGATGATCAGTTGGAAGTAAAGACAGATGGCTCCACTGCTAAAAAGATGCTTCAATATTCAAGGAGAAAGTTCAGGTCAAAGCAAGGTTGTTTCCCTGGATCAAACATGGTCCATGCACCTCATAAAGAGTCCATAAATATGCCAGCTTTCTTGAGTGGAGATTCTGGTAACCAGGTTTCTGAAAATGAGCCTGGCACCGAGAATTCTAGGAGTGATTGTCCATTGTCATGTGTCTTGCAACCTGAAAACCATCTTACTGAAATGACCACTAGTCTGAGTTTGAAAGCTGCTTCTTCACGACCTTCAAATTTCAATCTGGAACCTATGTCGGTGGATGAAAATACTGGACCAGAGGTCCATAATCAAACTACAGAGGAATTGATAATAGATGGCAAAAGTAGTTGCACAACACCTGATCATTCTAAGGTGCCCTGCAAGATGGGCTCCTCAGAAATCGGTAGTAAGGACCATGAGATTTCTGATGACAAGATAAATTCTAGCTCACTTACTGTTGCTAAAGACAAAAACATTGACATGCGAACTGAGGACCTTGTCACAGAAGCAATTAACACCAGTTATAGCAATAGCCTGTATGTCTGTGAAGTACATCAAGAATTTGATTCTACCGACAAGAGTAACAAGGTGGAAGCTACTTCATCTCCTGTTTCATCAGTAACCGAGCAGACACAGGTCATCGTGGAAGAAAATTCTGATAGTGCTAGAAAGAATCATAGCACTGAAAGCATGAGCTTTGGTGCATCCTTGAAAGAGACAGTGGAAACTTCTAATTTGAATGCAAGCAACAAAGAACTTACTGTAAATTGTGATAAATCAATAAATGAGCAGACTTCTAACATTGATGCTCATGAAGTTCCAAAAGAGCTTTGTGCCCCTGCAGACTCCAGCCCTCAGTTTATTTCAGATGTGAGAAAAGAACTGGAAATCCAGCCAAGCAGCATGAATGATGAGGAAATCTGCTCTGGTACTGGTGCCCACCCATCATTAAAGGACTCTTCTGTGTCAATCCAGGAGTGTTCTGCAAGTGAGGGAGAGAAATGTGCCAAAGACAACTTAAATGAAAGCAAAGTTCATTTTTCACAGGGCTATAGGGAGCTTACAAGCTCTGAAAGTACGCCAGGTCTTTGGTCAAATACCCAAAAGAAAAGAAACAGGGAATTGGAACAGATACAAGAGGACAATATAAACTTCCATGGCTTTGTCAGAAGTCCATGTGAAGGGTTGAGACCGAGGGCTAGTAAGGTAGCTTCTTGTGGAAGCATGGCTGAAACTAGCAATTCTATGGGGGAAAATCCAGAGTTTAAAAGGGCTAGGAAATCATCAGATGTTGTGGTGTCTAGCAAGAATAAGGGTTCTGTTAAGAGGTCTCACAAGTGTGACCTTGATGGTTGCCATATGAGTTTCGCAACCAAGGCAGAGTTAATGTTACACAAGCGCAACCGCTGCCCTCATGATGGGTGTGGAAAGAAGTTCAGATCGCACAAATATGCTGTGCTTCACCAGCGTGTCCATGATGATGATAGGCCCCTCAAGTGCCCATGGGAAGGTTGCTCAATGTCATTCAAGTGGGCATGGGCCAGGACCGAGCATATACGGGTGCATACTGGGGAAAAGCCATACCACTGCAAGGTTGAGGGGTGTGGCCTTTCTTTCAGATTTGTATCTGATTTCAGTAGGCACAGGCGGAAAACTGGGCACTATGTAAAGTCACTCAATTGA 4248 0.4268 MGDVEIPNWLKALPLAPEFRPTDTEFADPIAYISKIEKEASAFGICKIIPPLPKPSKRYVFSNLNKSLLKSPELASDINSIGVSNCLKMVSGDSGNDGEARAVFTTRHQELGQSIKRTKGTIQIPISGVHKQVWQSGEIYTLEQFESKSKAFARSVLGMVKEVSPLVIEAMFWKAASEKPIYVEYANDMPGSAFGESKGQFRYIHRRRRKKAYYQRSLDAKDCQEPKMESIRDAQTVESKDASAHNHADTWSQTSNSTSTLSTFSPNEVLNSIRQKSSDSSNEMEGTAGWKLSNSPWNLQVIARSQGSITRFMPDDIPGVTSPMVYIGMLFSWFAWHVEDHELHSMNFLHIGSSKTWYAVPGDYAFAFEQLVRTEAYGGNVDHLAALTLLGEKTTLLSPEAVVASGIPCCRLTQNPGEFVVTFPRAYHVGFSHGFNCGEAANFGTPQWLAVAKEAAVRRAAMNYLPMLSHQQLLYLLTMSFVSRVPRTLLPGVRSSRLRDRQKEERELLVKRSFIEDMLQENNLLSILLGKQSTYHAVLWNADLLPDSSKDSQLPDLTSTTGSFMADNMSNLFSADKSNHSCLFDEMSLYLENLTDFYMGDDSLPCHFQTDSGALACVGCGILGFPFMTVVQPSERSAMELLPVSGNALSVIDLTLTNEPSKLSLMNCDKGWNTSCKFLRPRIFCLEHAAQIIEMLQCKGGASVLVICHSDYQKIKAHARAVAEEIGCSFDYNEVPLDTASPEDLTLIDLAIDSEEHDECEEDWTAKLGINLRYCVNARKNSPYKQAPFKLALGMLFPEKFPDSDVLSVNWQSKRFRSRRLKYLAQAKACDEIQRKEDDQLEVKTDGSTAKKMLQYSRRKFRSKQGCFPGSNMVHAPHKESINMPAFLSGDSGNQVSENEPGTENSRSDCPLSCVLQPENHLTEMTTSLSLKAASSRPSNFNLEPMSVDENTGPEVHNQTTEELIIDGKSSCTTPDHSKVPCKMGSSEIGSKDHEISDDKINSSSLTVAKDKNIDMRTEDLVTEAINTSYSNSLYVCEVHQEFDSTDKSNKVEATSSPVSSVTEQTQVIVEENSDSARKNHSTESMSFGASLKETVETSNLNASNKELTVNCDKSINEQTSNIDAHEVPKELCAPADSSPQFISDVRKELEIQPSSMNDEEICSGTGAHPSLKDSSVSIQECSASEGEKCAKDNLNESKVHFSQGYRELTSSESTPGLWSNTQKKRNRELEQIQEDNINFHGFVRSPCEGLRPRASKVASCGSMAETSNSMGENPEFKRARKSSDVVVSSKNKGSVKRSHKCDLDGCHMSFATKAELMLHKRNRCPHDGCGKKFRSHKYAVLHQRVHDDDRPLKCPWEGCSMSFKWAWARTEHIRVHTGEKPYHCKVEGCGLSFRFVSDFSRHRRKTGHYVKSLN 1415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1531g0001 1415 ProSiteProfiles Zinc finger C2H2 type domain profile. 1323 1352 IPR013087 -
Prci1531g0001 1415 MobiDBLite consensus disorder prediction 242 263 - -
Prci1531g0001 1415 ProSiteProfiles Zinc finger C2H2 type domain profile. 1353 1382 IPR013087 -
Prci1531g0001 1415 Pfam JmjC domain, hydroxylase 324 443 IPR003347 -
Prci1531g0001 1415 MobiDBLite consensus disorder prediction 1206 1226 - -
Prci1531g0001 1415 SUPERFAMILY beta-beta-alpha zinc fingers 1363 1406 IPR036236 -
Prci1531g0001 1415 ProSitePatterns Zinc finger C2H2 type domain signature. 1385 1409 IPR013087 -
Prci1531g0001 1415 SUPERFAMILY beta-beta-alpha zinc fingers 1323 1360 IPR036236 -
Prci1531g0001 1415 ProSiteProfiles JmjN domain profile. 16 57 IPR003349 -
Prci1531g0001 1415 MobiDBLite consensus disorder prediction 969 998 - -
Prci1531g0001 1415 MobiDBLite consensus disorder prediction 1206 1223 - -
Prci1531g0001 1415 ProSiteProfiles JmjC domain profile. 291 460 IPR003347 -
Prci1531g0001 1415 SMART c2h2final6 1353 1377 IPR013087 -
Prci1531g0001 1415 SMART c2h2final6 1383 1409 IPR013087 -
Prci1531g0001 1415 SMART c2h2final6 1300 1322 IPR013087 -
Prci1531g0001 1415 SMART c2h2final6 1323 1347 IPR013087 -
Prci1531g0001 1415 MobiDBLite consensus disorder prediction 888 910 - -
Prci1531g0001 1415 ProSiteProfiles Zinc finger C2H2 type domain profile. 1383 1409 IPR013087 -
Prci1531g0001 1415 SMART JmjN_1 15 55 IPR003349 -
Prci1531g0001 1415 MobiDBLite consensus disorder prediction 1265 1292 - -
Prci1531g0001 1415 FunFam Probable lysine-specific demethylase ELF6 1350 1379 - -
Prci1531g0001 1415 Gene3D Cupin 9 464 - -
Prci1531g0001 1415 ProSitePatterns Zinc finger C2H2 type domain signature. 1325 1347 IPR013087 -
Prci1531g0001 1415 SUPERFAMILY Clavaminate synthase-like 291 457 - -
Prci1531g0001 1415 PANTHER LYSINE-SPECIFIC DEMETHYLASE 8 1349 - -
Prci1531g0001 1415 ProSitePatterns Zinc finger C2H2 type domain signature. 1355 1377 IPR013087 -
Prci1531g0001 1415 MobiDBLite consensus disorder prediction 246 263 - -
Prci1531g0001 1415 Gene3D Classic Zinc Finger 1321 1407 - -
Prci1531g0001 1415 SMART cupin_9 291 460 IPR003347 -
Prci1531g0001 1415 MobiDBLite consensus disorder prediction 1045 1066 - -
Prci1531g0001 1415 Pfam jmjN domain 17 50 IPR003349 -
Prci1531g0001 1415 MobiDBLite consensus disorder prediction 1050 1066 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1531g0001 1 860 C2H2 Transcription Factor Family AT5G04240 57.631 0.0 987
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Prci1531g0001 JmjC 1.1e-35 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1531g0001 - - adu:107467970 1565.82