Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1527g0002 ATGTCTGCAAATCAGACCCTTGGGACTTGCCAGGGGGGCTTACTCTGTACAGGTCATATGGAACAGGAGAGATATTTCTTCAGTACCAGAGAAGCTAAGTACTCTAATGGAAGCCGATCTAACAGAGCCACACTTTCTGGGTATTGGAAGGCCACGGGTTTAGACAAGCAAATTTTGACTTCGAAACCCAACAACCATCAAGTCGTCGTTGGCATGAAGAAGACTCTGGTTTTCTACAAAGGCAAGCCTCCTCATGGCTCCAGAACCGACTGGATCATGCACGAGTATCGCCTCCATAATACACAGAGCTCTGTGGTGGGTATGCAGAACTGGGTACTGTGTCGTATATTCTTGAAGAGAAGAAATGGAAAGATGAGTACTGAAGAACAGAGCAATTTCAGAGTGAATAGAGACATGATGAACAAGTTAAGCTCAAGGCCTGTGTTCTATGATTTCTTATCACAGAGCAATAAGAATAACAATAATAATAGTAAGACTGATTTGAATCGGACACCTACCTCGTCGACCTCAAGCATAAGTGGAATCACGCATCTCTCTGGTTCTCGTTCTCTTCACAACGAATCTGATGAGCGTGAAGAAGCAAGCAGTAGTTGCAACAGCTTACCGTCTCTTACAAGAAACCCGTGA 648 0.4429 MSANQTLGTCQGGLLCTGHMEQERYFFSTREAKYSNGSRSNRATLSGYWKATGLDKQILTSKPNNHQVVVGMKKTLVFYKGKPPHGSRTDWIMHEYRLHNTQSSVVGMQNWVLCRIFLKRRNGKMSTEEQSNFRVNRDMMNKLSSRPVFYDFLSQSNKNNNNNSKTDLNRTPTSSTSSISGITHLSGSRSLHNESDEREEASSSCNSLPSLTRNP 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1527g0002 215 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 20 183 - -
Prci1527g0002 215 SUPERFAMILY NAC domain 21 119 IPR036093 GO:0003677|GO:0006355
Prci1527g0002 215 Gene3D NAC domain 8 124 IPR036093 GO:0003677|GO:0006355
Prci1527g0002 215 ProSiteProfiles NAC domain profile. 1 119 IPR003441 GO:0003677|GO:0006355
Prci1527g0002 215 MobiDBLite consensus disorder prediction 153 215 - -
Prci1527g0002 215 MobiDBLite consensus disorder prediction 153 189 - -
Prci1527g0002 215 Pfam No apical meristem (NAM) protein 20 98 IPR003441 GO:0003677|GO:0006355
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1527g0002 18 208 NAC Transcription Factor Family AT5G13180 49.282 5.51e-54 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Prci1527g0002 NAM 1.2e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1527g0002 - - qsa:O6P43_023807 219.164