LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Prci1516g0003	ATGTCTCGCATTTTTTGTTTTAAATTTGATGATATATTGAACAATTTGTTTGTTATAGTTGTGCACATGTGTAGGATTAAGTCTAGCAAGGCAAAGATGAGTGTGGCGAGGGCAGGAAGCTCAGATGAGTGTACTGGGCATGCAGAGCCTCCTGATCCTGATATTCTTGAAATTGATCCAACTTGTCGATACATTAGGTATAAAGATGTGATCGGCAAAGGTGCTTTCAAGACATGTTATAAGGCATTTGATGAAGTCAGTGGACTTGAAGTGGCCTGGAACCAGGTTCGGATTGATGAGGTGCTACAGTCACCAGGTGACTTGGAAAGGCTCTACTCAGAAGTGCATCTCTTAAAATCATTGAAGAACAATAACATAGTAAAATTCTACAATTCCTGGATTGATAATAAGAACAAGACTGTTAACATCATCACGGAGTTGTTCTCTTCGGGTAGCCTCAGACAGAAGCACAAGAAGGTTGACATGAAGGCTCTTAAAGGATGGGCAAGACAGATATTAATGGGTTTAAACTACCTCCATGGTCACAACCCACCTATTATACACAGGGATCTGAAGTGTGATAATATATTTATCAATGGAAACCAAGGTGAAGTTAAAATTGGAGATCTGGGGCTGGCAACTTTCTTGGAACGGACTAATGCTGAGAGTGTGATTGGAACCCCTGAATTTATGGCACCCGAGCTGTATGATGAAAATTACAATGAATTGGCCGACATATATTCATTTGGAATGTGCATGCTTGAGTTGGTGACTTCTGAGTATCCGTATAGTGAATGCAAAAACTCAGCTCAGATATACAAGAAGGTTTCATCTGGTATAAAACCCGCTTCCCTTTCTAAAGTCAAAGATCCAGAAATGAAATTATTTATTGAGAAATGTCTAGTCCCAGCATCTCAAAGAATGTCAGCAAAGGAGCTTTTGATAGATCCTTTTCTTCAAATGAATAGTTTGGCAAGAAATCGTCGTCTATCCTTACCAGATATTGTCATCCCTAAATGTGGAGCCTTTGGAGATCGTATCCTCGTGTCAGAAGGTCCTGCTACTCAACATAACAGATCAAATTCCTTGGATCTTGATGATACTTGTGAATTACCTATGATCACTACATACGATGGTTCTGGTAACGCTTCACATTGTCAATGTGTTGAGGTACAAAAGTTGAAGAGAGGTGATATTTTCAATCTAAAAGGTGAAGAAAATGATGAGAATTCTGTGTCGATAGTTCTTCGGATAGCTGATCAAGGAGGGCGAGTAAGAAATATCCATTTCTTATTTTACCTAGATAGTGATACTGCTATTTCAGTTTCAAGTGAAATGGTTGAGCAACTCGAACTTCCAGATCAAAATATAAAATTCATAGCTGAGTTGATAGATTTGTTATTGATTAATTTGGTTCCAAAGTGGAAACCTTGTGTAGATATTGCTCATTTGGTTTCACGAAGTTGTAGAAAAACTATTATTGGACAAAAAGATCTGGAGCTAGCAAAACAGAAGCAGCACTCAGAAGATTCTATACAAAATATTACTGAAGAGAAAGGTATCTCATGCTCGAATCGCAGCTCTCTTGCATCAGAAAAACATTATCACTCCAACTTGAATGAAATTTCATCCTATGGCAACATTGATCACGGAAATACAATCAAAATAGATGATTTGTGTTCTGAGACTAATGATAAGAAGTTATCTTTAGTTTCGTTCTTGTCTGTGGACTCAGCATTTAATGATTTCAACTTGCCAAGAGTGCCAGGAGAGACTGAATGCTCTTTTGTATCTGTAATGGAAGCATGGCCAAATTATCATAGGAGTAAGATATCAGAATTAGGAAGTCATGATATGTTAAGCTTCCCAGCCCATTCTAGTAATGTTTCTTCTTTATCTAACGTAGAAGATGAGTTGAAAATAGAGTTAGAAGTGATTGAACAGAAATATCTAGAGACAATTAAAGAAGCATCAAAAGTAAGATCTCAAGCTATCATGGAGGTTAGAGGAAGGTTACCCCAGAAGAAGATCCAATCATAA	2040	0.377	MSRIFCFKFDDILNNLFVIVVHMCRIKSSKAKMSVARAGSSDECTGHAEPPDPDILEIDPTCRYIRYKDVIGKGAFKTCYKAFDEVSGLEVAWNQVRIDEVLQSPGDLERLYSEVHLLKSLKNNNIVKFYNSWIDNKNKTVNIITELFSSGSLRQKHKKVDMKALKGWARQILMGLNYLHGHNPPIIHRDLKCDNIFINGNQGEVKIGDLGLATFLERTNAESVIGTPEFMAPELYDENYNELADIYSFGMCMLELVTSEYPYSECKNSAQIYKKVSSGIKPASLSKVKDPEMKLFIEKCLVPASQRMSAKELLIDPFLQMNSLARNRRLSLPDIVIPKCGAFGDRILVSEGPATQHNRSNSLDLDDTCELPMITTYDGSGNASHCQCVEVQKLKRGDIFNLKGEENDENSVSIVLRIADQGGRVRNIHFLFYLDSDTAISVSSEMVEQLELPDQNIKFIAELIDLLLINLVPKWKPCVDIAHLVSRSCRKTIIGQKDLELAKQKQHSEDSIQNITEEKGISCSNRSSLASEKHYHSNLNEISSYGNIDHGNTIKIDDLCSETNDKKLSLVSFLSVDSAFNDFNLPRVPGETECSFVSVMEAWPNYHRSKISELGSHDMLSFPAHSSNVSSLSNVEDELKIELEVIEQKYLETIKEASKVRSQAIMEVRGRLPQKKIQS	679

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Prci1516g0003	679	SUPERFAMILY	Protein kinase-like (PK-like)	67	361	IPR011009	-
	Prci1516g0003	679	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	186	198	IPR008271	GO:0004672\|GO:0006468
	Prci1516g0003	679	Gene3D	Phosphorylase Kinase; domain 1	50	146	-	-
	Prci1516g0003	679	SMART	serkin_6	65	319	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Prci1516g0003	679	FunFam	probable serine/threonine-protein kinase WNK9	148	324	-	-
	Prci1516g0003	679	Coils	Coil	629	656	-	-
	Prci1516g0003	679	CDD	STKc_WNK	63	319	-	-
	Prci1516g0003	679	FunFam	Probable serine/threonine-protein kinase WNK1	50	146	-	-
	Prci1516g0003	679	ProSiteProfiles	Protein kinase domain profile.	65	319	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Prci1516g0003	679	Gene3D	Transferase(Phosphotransferase) domain 1	149	326	-	-
	Prci1516g0003	679	PANTHER	SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED	50	672	-	-
	Prci1516g0003	679	Pfam	Protein kinase domain	68	319	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Prci1516g0003	162	514	MAP Kinase Kinase Kinase	AT1G49160	66.006	1.57e-166	483

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	WNK_NRBP	Prci1516g0003		Pkinase	3.5e-48	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Prci1516g0003	K08867		-	gmx:121175054	770