Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1514g0002 AATCAGCTTGGTGTTCGAATCAAAGATGGATTGTTCTACAAGTTCACTGGGTTCCGTGACCAGGATGTGGCAAGTTTGACTAGCTTTTTCCAAAATACATGTGGGATTACACCAGAGGAAAAGCAGCTTTCTGTTAGTGGGCGTAACTGGGGAGAAGTTGATCTAAATGGAAATATGCTGACTTTCATGGTTGGCTCAAAGCAAGCTTTTGAGGTATCTTTAGCAGATGTCTCTCAAACACAGCTTCAAGGGAAAAATGATGTGATCTTGGAGTTTCATGTGGATGACACGACTGGGGCTAATGAGAAAGATTCTTTGATGGAGATAAGTTTTCACATACCAAATTCCAACACCCAATTTGTTGGTGATGAAAATCGTCCTCCTGCTCAGGTTTTCCGTGATAAAATCATGTCTATGGCAGACGTCGGTGCTGGAGGTGAAGATGCTGTTGTTACGTTTGAGGGTATTGCTATTCTAACACCAAGGGGGCGGTACAGTGTTGAACTACATCTGTCATTCTTGCGGCTTCAAGGACAAGCTAATGATTTCAAAATCCAGTATAGCAGTGTTGTTCGCCTATTTTTACTTCCCAAGTCAAATCAGCCACACACCTTTGTTGTTATTAGTCTTGATCCGCCAATTCGTAAAGGACAAACTTTGTACCCACACATTGTGATGCAGTTTGAAACTGATTACGTAGTTCAAAGCACGTTGTCAATGGGTGAAGATCTTTACAACAGTAAGTACAAGGACAAGTTGGAGCTTTCATATAAGGGGCTCATCCATGAAGTTTTCACAACAATATTGCGTGGTTTGTCTGGTGCCAAAGTTACCAAGCCAGGAAAATTCAGGAGCTGTCAAGATGGTTATGCTGTGAAATCGTCTTTGAAAGCTGAAGATGGAATTTTGTATCTTGAGAAGAGCTTCTTCTTTTTACCTAAACCTCCTACCCTCATTCTTCATGAAGAGATTGACTATGTGGAATTTGAGAGGCATACTGCTGGGGGTTCAAATATGCATTATTTTGACCTTCTTATCAGACTAAAAACTGAGCAGGAGCATCTATTCCGTAATATTCAGAGAAATGAATACCACAATCTTTTTGACTTTATCAGTTCAAAAGGCTTGAAAATTATGAACCTTGGAGGTGTCCAAGCTACTGATGGTGTCGCCGCTGTTCTTCAAGAAGATGATGATGATGCTGTTGATCCACATCTTGAGCGCATAAAAAATGCAGCTGGTGGAGATGAGAGAGATGAGGATTTTGTTGCCGATGAGGATGATAGTGGTTCTCCGACTGATGATTCTGGAGAAGACGAGTCTGATGCAAGTGAAGGTGGTGGGAAAGAGAAGCCCGCCAAAAAGGAATCAAAGAAGGAACTGTCTTCTAAGGCATCTACTTCAAAGAAGAAACCTAAAGATGGAGACGAAGATGGGAAAAAGAAAAAAAAACAGAAGAAGAAAAAGGATCCTAATGCGCCAAAGAGGGCATTGTCTGGTTTCATGTTCTTCTCCCAAATGGAGAGAGAGAATCTGAAGAAAAGTAATCCTGGAATTTCATTTACGGATGTGGGAAGAGTACTTGGAGAGAAATGGAAGAAGATGTCAGCGGACGAGAAGGAACCGTATGAAGCAAAAGCTCGTGCAGATAAAAAACGTTACAAGGATGAGATCAGTGGGTACAAGAATCCGCAACCTATGAACGTAGACTCAGGAAACGAATCTGATAGTACTTGA 1737 0.4145 NQLGVRIKDGLFYKFTGFRDQDVASLTSFFQNTCGITPEEKQLSVSGRNWGEVDLNGNMLTFMVGSKQAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNTQFVGDENRPPAQVFRDKIMSMADVGAGGEDAVVTFEGIAILTPRGRYSVELHLSFLRLQGQANDFKIQYSSVVRLFLLPKSNQPHTFVVISLDPPIRKGQTLYPHIVMQFETDYVVQSTLSMGEDLYNSKYKDKLELSYKGLIHEVFTTILRGLSGAKVTKPGKFRSCQDGYAVKSSLKAEDGILYPXEKSFFFLPKPPTLILHEEIDYVEFERHTAGGSNMHYFDLLIRLKTEQEHLFRNIQRNEYHNLFDFISSKGLKIMNLGGVQATDGVAAVLQEDDDDAVDPHLERIKNAAGGDERDEDFVADEDDSGSPTDDSGEDESDASEGGGKEKPAKKESKKELSSKASTSKKKPKDGDEDGKKKKKQKKKKDPNAPKRALSGFMFFSQMERENLKKSNPGISFTDVGRVLGEKWKKMSADEKEPYEAKARADKKRYKDEISGYKNPQPMNVDSGNESDST 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1514g0002 579 Pfam Structure-specific recognition protein (SSRP1) 47 115 IPR024954 -
Prci1514g0002 579 MobiDBLite consensus disorder prediction 420 442 - -
Prci1514g0002 579 Gene3D High mobility group box domain 478 573 IPR036910 -
Prci1514g0002 579 Pfam HMG (high mobility group) box 495 563 IPR009071 -
Prci1514g0002 579 SMART Rtt106_2 289 382 IPR013719 -
Prci1514g0002 579 MobiDBLite consensus disorder prediction 396 503 - -
Prci1514g0002 579 Gene3D - 37 120 IPR038167 -
Prci1514g0002 579 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 495 563 IPR009071 -
Prci1514g0002 579 Pfam Histone chaperone Rttp106-like 291 380 IPR013719 -
Prci1514g0002 579 FunFam FACT complex subunit SSRP1 280 389 - -
Prci1514g0002 579 FunFam Fact complex subunit ssrp1 140 279 - -
Prci1514g0002 579 SMART hmgende2 494 564 IPR009071 -
Prci1514g0002 579 MobiDBLite consensus disorder prediction 443 484 - -
Prci1514g0002 579 SUPERFAMILY HMG-box 482 564 IPR036910 -
Prci1514g0002 579 PRINTS Structure-specific recognition protein signature 297 315 IPR000969 GO:0003677|GO:0005634
Prci1514g0002 579 PRINTS Structure-specific recognition protein signature 270 283 IPR000969 GO:0003677|GO:0005634
Prci1514g0002 579 PRINTS Structure-specific recognition protein signature 160 176 IPR000969 GO:0003677|GO:0005634
Prci1514g0002 579 PRINTS Structure-specific recognition protein signature 205 221 IPR000969 GO:0003677|GO:0005634
Prci1514g0002 579 PRINTS Structure-specific recognition protein signature 315 332 IPR000969 GO:0003677|GO:0005634
Prci1514g0002 579 PRINTS Structure-specific recognition protein signature 357 375 IPR000969 GO:0003677|GO:0005634
Prci1514g0002 579 PRINTS Structure-specific recognition protein signature 182 198 IPR000969 GO:0003677|GO:0005634
Prci1514g0002 579 PRINTS Structure-specific recognition protein signature 341 357 IPR000969 GO:0003677|GO:0005634
Prci1514g0002 579 FunFam FACT complex subunit SSRP1 37 120 - -
Prci1514g0002 579 SUPERFAMILY PH domain-like 147 381 - -
Prci1514g0002 579 Gene3D - 140 279 - -
Prci1514g0002 579 MobiDBLite consensus disorder prediction 535 579 - -
Prci1514g0002 579 PANTHER FACT COMPLEX SUBUNIT SSRP1 1 548 - -
Prci1514g0002 579 MobiDBLite consensus disorder prediction 399 419 - -
Prci1514g0002 579 MobiDBLite consensus disorder prediction 535 560 - -
Prci1514g0002 579 CDD HMG-box_AtSSRP1 492 566 - -
Prci1514g0002 579 CDD PH1_SSRP1-like 148 281 - -
Prci1514g0002 579 MobiDBLite consensus disorder prediction 565 579 - -
Prci1514g0002 579 CDD PH2_SSRP1-like 283 382 - -
Prci1514g0002 579 FunFam FACT complex subunit SSRP1 478 572 - -
Prci1514g0002 579 Gene3D - 280 388 IPR011993 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1514g0002 491 563 ARID Transcription Factor Family AT1G04880 41.096 6.42e-10 59.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Prci1514g0002 Rtt106 1.2e-19 CL0266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1514g0002 K09272 - cave:132182356 965.681