Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1514g0001 ATGGCACTTAGAATTACAGTATCGTTAGTCGTCGCATTATTGGCCATTACAATTCCATGCCTCGAGGCTAACATTGGAGAGGTTGATGAGTATCTCCAAGAAAAAGCAACGCAAGCCCGCAGAGCAGCTCTCGAAGCCTACGAGGCCGATCCTTTAAACGTCACGTCCGAGCTTAACATGCACGTTCATCTAGCGATGGATGATGCCAACAGCAGCAGAGGGAGGGACCTGAGGGAGAACAAGAATCACAGGGAGAAATGCAAGGCCACCAACCCAATAGACCGATGCTGGAGATGCGACCCAAATTGGGAGAAGAATAGATTTAGGTTAGCCGAATGCGCCATGGGTTTCGGCCGCAAGGCCACCGGAGGGTTGGGTGGTAGGATCTACGTCGTCACGGATGATTCCGATCTCGACATGGTTAACCCGAAACCCGGAACTCTGAGGCACGGGGTGATCCAGAAGGGGCCTCTCTGGATCATATTCTCCCGCAGCATGGTGATCAAGTTGAAGGAGGAGTTGATGGTGTCATCGGACAAGACCATCGACGGTCGCGGAGCCAATGTTCAGATCAGAAATGGCGGGGGCATCACTTTGCAGTTCGTCAATAACGTCATCATCCACAACCTTCGCATTCGCAACATCAAACCTAAGGCGGGTGGCACGATAAGGGACTCCGTGGATCATATCTCTGTGAGAACCAGAAGTGACGGCGATGCCATCGGCCTCTTCGGGGCCACCAATATTTGGATTGATCATATTTCCCTCGCCAACGCCGAGGACGGCCTCATCGACGTCATCATGGGTTCCACCGGCGTTACCGTCTCAAATTGCCACTTGACCAGACACAACGATGTGATGCTGTTCGGAGGTGGTGAGGTGTATCATCAGGACAAGGTGATGCAGATAACGGTGGCGTTCAACCACTTCGGGAACGGATTGATACAGAGGATGCCGAGATGCAGATACGGGTTCTTCCACGTGGTGAACAACGACTACACTCACTGGATAATGTACGCCATCGGAGGAAGCTCGAACCCCACTATACTGAGCCAAGGAAACCGATTCATTGCTCCGAACAACGATGCGACGAAGGAGATTACGAATAGGGTGGGGACGCCGCCAGCAGTGTGGAAAGACTGGCAATGGCAGTCGGAGAATGACCAGTTGGATAACGGCGCCATTTTCGTTCAATCGGGAAGGCCGATAACTTCCATCGATAGAGGGAGCTTAATCACGCCGAGACCTGGGATTGAAGCTCCGTTGCTTGCACGATATTCGGGTGCGCTCAGGTGCAGGCCTGGTAAGCCTTGTTAG 1317 0.527 MALRITVSLVVALLAITIPCLEANIGEVDEYLQEKATQARRAALEAYEADPLNVTSELNMHVHLAMDDANSSRGRDLRENKNHREKCKATNPIDRCWRCDPNWEKNRFRLAECAMGFGRKATGGLGGRIYVVTDDSDLDMVNPKPGTLRHGVIQKGPLWIIFSRSMVIKLKEELMVSSDKTIDGRGANVQIRNGGGITLQFVNNVIIHNLRIRNIKPKAGGTIRDSVDHISVRTRSDGDAIGLFGATNIWIDHISLANAEDGLIDVIMGSTGVTVSNCHLTRHNDVMLFGGGEVYHQDKVMQITVAFNHFGNGLIQRMPRCRYGFFHVVNNDYTHWIMYAIGGSSNPTILSQGNRFIAPNNDATKEITNRVGTPPAVWKDWQWQSENDQLDNGAIFVQSGRPITSIDRGSLITPRPGIEAPLLARYSGALRCRPGKPC 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1514g0001 438 PRINTS Pollen allergen Amb family signature 137 162 IPR018082 -
Prci1514g0001 438 PRINTS Pollen allergen Amb family signature 381 405 IPR018082 -
Prci1514g0001 438 PRINTS Pollen allergen Amb family signature 317 336 IPR018082 -
Prci1514g0001 438 PRINTS Pollen allergen Amb family signature 173 189 IPR018082 -
Prci1514g0001 438 PRINTS Pollen allergen Amb family signature 237 258 IPR018082 -
Prci1514g0001 438 PRINTS Pollen allergen Amb family signature 113 130 IPR018082 -
Prci1514g0001 438 PRINTS Pollen allergen Amb family signature 339 358 IPR018082 -
Prci1514g0001 438 Pfam Pectate lyase 171 356 IPR002022 -
Prci1514g0001 438 SUPERFAMILY Pectin lyase-like 91 403 IPR011050 -
Prci1514g0001 438 PANTHER PECTATE LYASE 18-RELATED 39 436 IPR045032 GO:0030570
Prci1514g0001 438 Pfam Pectate lyase, N terminus 24 73 IPR007524 GO:0030570
Prci1514g0001 438 Gene3D - 90 429 IPR012334 -
Prci1514g0001 438 SMART amb_all 165 362 IPR002022 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1514g0001 12 438 Polysaccharide Lyase AT1G14420 56.208 2.75e-177 501
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1514g0001 K01728 - gmx:100785801 593.578