Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci14g2466 ATGAGTGAGAATTCAAAGGTGGTGATGGTGGATCGATTGCTTCTTTCTATCAAAGAGATTTCGGAGTTACCTGAATGTCGAAACGTTTGCAAGAGGATGTATGGGAGTTTGGTTCGAAGGGTAAAGTTATTGAGCCCGTTGTTCGAGGAAATTAAGGACAGTGATTGTGAGTTGCTTAGCGACGACCATATTAGATCGTTTGAATCGCTGGGAAATGCTTTGGATTCAGCTAAGAGCCTTCTCAAGTTCACGAGCCAAGGGAGTAAGCTTTATCGGGCTCTGCAGAGGAATGAAATGGCAGAAAAGTTCCAACAAATAAATGATCGAATTGAAGAAGCAATTAGTGTACTTCAATATGAAAAGCTTGAGATATCACAGGAAGTTCGAGAACAGATTGAGCTTGTGCATGCTCAATATAAAAGAGCAAATGCTAGAACGGAATTAGCTGATTTAGAACTACATTTGGATTTAGCTGTAGCACAAAAAGAAAAAGACCCAGATCATGAGATGCTCAATGGGCTTTCTGAGAAGTTGCATCTGAAGACTATAAATGACCTCAAGGAAGAATCAACTGAATTACATGAATTGCAGATCACAAGTGGTGGAGAACTAGGGGACTCTATTGAGATGATGTCATCTCTTCTTAAGAGACTAAAGGACTGTGTGCTCAATGAAAACCCTGAAATTGACACCCGTGAGGGTGAAAAATTTTCAATGAAGCACAGATCACCTGTAATTCCAGATGATTTTAGATGTCCAATATCTCTTGAACTAATGAAAGATCCTGTAATTGTCTCTACTGGACAGACATATGAAAGATCCTGCATTCAAAAATGGCTTGATTCTGGGAACAAAACATGTCCCAAGTCACAACAAACACTTTTGCACACAGCCCTAACCCCTAACTATGCTTTGAAGAGTCTGATTGCTTTGTGGTGTGAAAACAATGGTGTTGAGCTACCAAAAAAGCATGGAAGCTGTAAAACAAAGAAATCTGGAAGCAGTCTTTCAGATTGTGATCGAGCTGCTATTAATGCTTTATTGGATAGGCTAGCAAATGGTGACATGGAACAGCAGAGGGCTGCAGCTGGTGAGCTTCGATTGCTAGCTAAGAGAAATGCTGATAACAGGGTATGTATTGCTGAGGCAGGAGCAATACCGCTTCTTGTAGAGTTGCTGTCTTCCTCGGATCCTCGAACCCAGGAGCATGCTGTCACAGCGCTTCTCAATCTGTCCATCAACGAGAGTAACAAAGGAACAATTGTCAATGCAGGAGCTATACCAGATATTGTAGATGTACTGAAAAATGGCAGTATGGAAGCCAGAGAAAATGCAGCTGCAACTCTCTTTAGTTTATCAGTTCTAGATGAGAACAAGGTTGCAATAGGAGCAGCTGGGGCTATCCCTGCTTTGATTAGCTTGCTTTGTGAAGGCACTCCCAGAGTGACGCTGGAGGTGGAATGGTGGATGAAGCACTAG 1479 0.4192 MSENSKVVMVDRLLLSIKEISELPECRNVCKRMYGSLVRRVKLLSPLFEEIKDSDCELLSDDHIRSFESLGNALDSAKSLLKFTSQGSKLYRALQRNEMAEKFQQINDRIEEAISVLQYEKLEISQEVREQIELVHAQYKRANARTELADLELHLDLAVAQKEKDPDHEMLNGLSEKLHLKTINDLKEESTELHELQITSGGELGDSIEMMSSLLKRLKDCVLNENPEIDTREGEKFSMKHRSPVIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDSGNKTCPKSQQTLLHTALTPNYALKSLIALWCENNGVELPKKHGSCKTKKSGSSLSDCDRAAINALLDRLANGDMEQQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSSDPRTQEHAVTALLNLSINESNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVLDENKVAIGAAGAIPALISLLCEGTPRVTLEVEWWMKH 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci14g2466 492 SMART arm_5 373 413 IPR000225 GO:0005515
Prci14g2466 492 SMART arm_5 414 454 IPR000225 GO:0005515
Prci14g2466 492 FunFam RING-type E3 ubiquitin transferase 245 319 - -
Prci14g2466 492 CDD RING-Ubox_PUB 247 299 IPR045210 -
Prci14g2466 492 Coils Coil 141 161 - -
Prci14g2466 492 SUPERFAMILY ARM repeat 340 488 IPR016024 -
Prci14g2466 492 Pfam U-box domain 246 316 IPR003613 GO:0004842|GO:0016567
Prci14g2466 492 Gene3D - 330 487 IPR011989 -
Prci14g2466 492 SUPERFAMILY RING/U-box 245 321 - -
Prci14g2466 492 FunFam RING-type E3 ubiquitin transferase 6 120 - -
Prci14g2466 492 Gene3D - 6 120 IPR036537 GO:0007166
Prci14g2466 492 CDD MLKL_NTD 13 138 - -
Prci14g2466 492 ProSiteProfiles U-box domain profile. 245 319 IPR003613 GO:0004842|GO:0016567
Prci14g2466 492 SMART Ubox_2 249 312 IPR003613 GO:0004842|GO:0016567
Prci14g2466 492 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 246 320 IPR013083 -
Prci14g2466 492 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 425 467 IPR000225 GO:0005515
Prci14g2466 492 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 384 426 IPR000225 GO:0005515
Prci14g2466 492 FunFam RING-type E3 ubiquitin transferase 343 460 - -
Prci14g2466 492 Pfam Armadillo/beta-catenin-like repeat 373 412 IPR000225 GO:0005515
Prci14g2466 492 PANTHER U BOX DOMAIN-CONTAINING 33 481 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci14g2466 Prci-Chr14 31254801 31258180 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci14g2466 9 481 U-box Gene Family AT3G54850 63.713 0.0 571
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci14g2466 - - qsa:O6P43_008674 735.332