Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci14g2456 ATGAGAATCAACGCATCTCTCTCCAGAAGACAACTCCTCTCGGTTGGAAAATCCGATCAAGCTCCCGGCTGCCTCACCGGCAACCCGATCGACGACTGCTGGCGATGCGACCCCAACTGGGCAGCTGACCGCCAGAAGCTGGCGGACTGTGGCATTGGGTTCGGCTCCGACGCTGCTGGTGGCAAGGGCGGCCAGTTCTACATCGTCACCGACCCATCCGACGACGACCCGGTGAACCCAGCTCCGGGAACTCTTCGGCACGCCGTAATCCAAGACATGCCCCTCTGGATCGTGTTCGCTGGCAACATGATGATCGCCCTTAAGCAGGAGCTCATGTTCAACAGCTTCAAGACCATGGACGGGCGTGGCGCCAGCGTGCACATCATCGGCAACGGCTGCATCACCCTGCAATACGTCACCAACATCATCATCCACAACGTGCATATCCACCACTGCAGGCCGTCGAGCAAAGGTATGATACGGGCGAGTCCAACAAAGGCAGGGTTGAGAGGGGGATCAGACGGCGACGGGGTGTCGATCTATGGGTCGGAGAAGATCTGGATAGACCACTGCACGCTGGCGTATTGCAGGGACGGCCTAATAGACGCGATAATGGGGTCGACGGGGATAACGATATCGAACAACCAATTCTCACACCACGACAAGGTGATGCTGTTGGGGCACGACGATAGGTATACAGGGGACAGGAGGATGCAGGTGACAGTAGCGTTCAATCACTTCGGGGAGAAGCTGGTGCAGCGGATGCCACGATGCAGGCACGGGTACGTACACGTGGTGAACAACGATTATACGCAGTGGGAAATGTACGCAATCGGCGGCAGTGCGAGGCCCACCATAAACAGCCAGGGGAACCGCTACAGTGCTCCGGCCAATCCTAATGCTAAAGAGGTGACCAAGAGGGTGGACGCGGACGAGAGAGAGTGGGCGAGTTGGAGTTGGAAAACGGAGGGAGACCTCATGATGAACGGAGCATACTTCGTGGCATCCGGCGATTGGGTTAGCACCCAGTACGCGCAGGACTCGTCTCTCCCACCCCAATCCGCCCTTCATATCGACCTCCTCACCCTCAACGCCGGCGTCTTCAACGATCCCAGGGAAAGTGGTGATGTGTATCCGCTGTTCCTCCAGAACGGAGTGATTTTGAATAATGCTGCTGCGCCACCCTCCTCCCCCCTCCTGTCTCTTGTATTCTTATTAGTTTATGTATTCGATTAA 1236 0.568 MRINASLSRRQLLSVGKSDQAPGCLTGNPIDDCWRCDPNWAADRQKLADCGIGFGSDAAGGKGGQFYIVTDPSDDDPVNPAPGTLRHAVIQDMPLWIVFAGNMMIALKQELMFNSFKTMDGRGASVHIIGNGCITLQYVTNIIIHNVHIHHCRPSSKGMIRASPTKAGLRGGSDGDGVSIYGSEKIWIDHCTLAYCRDGLIDAIMGSTGITISNNQFSHHDKVMLLGHDDRYTGDRRMQVTVAFNHFGEKLVQRMPRCRHGYVHVVNNDYTQWEMYAIGGSARPTINSQGNRYSAPANPNAKEVTKRVDADEREWASWSWKTEGDLMMNGAYFVASGDWVSTQYAQDSSLPPQSALHIDLLTLNAGVFNDPRESGDVYPLFLQNGVILNNAAAPPSSPLLSLVFLLVYVFD 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci14g2456 411 SUPERFAMILY Pectin lyase-like 28 367 IPR011050 -
Prci14g2456 411 FunFam Pectate lyase 27 369 - -
Prci14g2456 411 PRINTS Pollen allergen Amb family signature 110 126 IPR018082 -
Prci14g2456 411 PRINTS Pollen allergen Amb family signature 318 342 IPR018082 -
Prci14g2456 411 PRINTS Pollen allergen Amb family signature 254 273 IPR018082 -
Prci14g2456 411 PRINTS Pollen allergen Amb family signature 174 195 IPR018082 -
Prci14g2456 411 PRINTS Pollen allergen Amb family signature 347 370 IPR018082 -
Prci14g2456 411 PRINTS Pollen allergen Amb family signature 50 67 IPR018082 -
Prci14g2456 411 PRINTS Pollen allergen Amb family signature 276 295 IPR018082 -
Prci14g2456 411 PRINTS Pollen allergen Amb family signature 74 99 IPR018082 -
Prci14g2456 411 Pfam Pectate lyase 109 291 IPR002022 -
Prci14g2456 411 Gene3D - 27 369 IPR012334 -
Prci14g2456 411 PANTHER PECTATE LYASE 18-RELATED 10 369 IPR045032 GO:0030570
Prci14g2456 411 SMART amb_all 102 299 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci14g2456 Prci-Chr14 31196203 31198996 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci14g2456 2 368 Polysaccharide Lyase AT3G53190 67.030 0.0 517
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci14g2456 K01728 - gmx:100808438 582.793