Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci14g2455 ATGATGATTCCAGTTGGCTGCTGCGTTATTCTCTCGGTATGGCTCCTCAGCTTCCCTCTCTCTCCCCCTCCCATCAAAGCTGCCTTCAGCCCTGAACATGTGGTTATGGATGTTCAAAGGAGAATCAACGCATCTCTCTCCAGAAGACAACTCCTCTCGGTTGGAAAATCCGATCAAGCTCCCGGCTGCCTCACCGGCAACCCGATCGACGACTGCTGGCGATGCGACCCCAACTGGGCAGCTGACCGCCAGAAGCTGGCGGACTGTGGCATTGGGTTCGGCTCCGACGCTGCTGGTGGCAAGGGCGGCCAGTTCTACATCGTCACCGACCCATCCGACGACGACCCGGTGAACCCAGCTCCGGGAACTCTTCGGCACGCCGTAATCCAAGACATGCCCCTCTGGATCGTGTTCGCTGGCAACATGATGATCGCCCTTAAGCAGGAGCTCATGTTCAACAGCTTCAAGACCATGGACGGGCGTGGCGCCAGCGTGCACATCATCGGCAACGGCTGCATCACCCTGCAATACGTCACCAACATCATCATCCACAACGTGCATATCCACCACTGCAGGCCGTCGAGCAAAGGTATGATACGGGCGAGTCCAACAAAGGCAGGGTTGAGAGGGGGATCAGACGGCGACGGGGTGTCGATCTATGGGTCGGAGAAGATCTGGATAGACCACTGCACGCTGGCGTATTGCAGGGACGGCCTAATAGACGCGATAATGGGGTCGACGGGGATAACGATATCGAACAACCAATTCTCACACCACGACAAGGTGATGCTGTTGGGGCACGACGATAGGTATACAGGGGACAGGAGGATGCAGGTGACAGTAGCGTTCAATCACTTCGGGGAGAAGCTGGTGCAGCGGATGCCACGATGCAGGCACGGGTACGTACACGTGGTGAACAACGATTATACGCAGTGGGAAATGTACGCAATCGGCGGCAGTGCGAGGCCCACCATAAACAGCCAGGGGAACCGCTACAGTGCTCCGGCCAATCCTAATGCTAAAGAGGTGACCAAGAGGGTGGACGCGGACGAGAGAGAGTGGGCGAGTTGGAGTTGGAAAACGGAGGGAGACCTCATGATGAACGGAGCATACTTCGTGGCATCCGGCGATTGGGTTAGCACCCAGTACGCGCAGGACTCGTCTCTCCCACCCCAATCCGCCCTTCATATCGACCTCCTCACCCTCAACGCCGGCGTCTTCAACGATCCCAGGGAAAGTGGTGATGTGTATCCGCTGTTCCTCCAGAACGGAGTGATTTTGAATAATGCTGCTGCGCCACCCTCCTCCCCCCTCCTGTCTCTTGTATTCTTATTAGTTTATGTATTCGATTAA 1353 0.5639 MMIPVGCCVILSVWLLSFPLSPPPIKAAFSPEHVVMDVQRRINASLSRRQLLSVGKSDQAPGCLTGNPIDDCWRCDPNWAADRQKLADCGIGFGSDAAGGKGGQFYIVTDPSDDDPVNPAPGTLRHAVIQDMPLWIVFAGNMMIALKQELMFNSFKTMDGRGASVHIIGNGCITLQYVTNIIIHNVHIHHCRPSSKGMIRASPTKAGLRGGSDGDGVSIYGSEKIWIDHCTLAYCRDGLIDAIMGSTGITISNNQFSHHDKVMLLGHDDRYTGDRRMQVTVAFNHFGEKLVQRMPRCRHGYVHVVNNDYTQWEMYAIGGSARPTINSQGNRYSAPANPNAKEVTKRVDADEREWASWSWKTEGDLMMNGAYFVASGDWVSTQYAQDSSLPPQSALHIDLLTLNAGVFNDPRESGDVYPLFLQNGVILNNAAAPPSSPLLSLVFLLVYVFD 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci14g2455 450 Pfam Pectate lyase 148 330 IPR002022 -
Prci14g2455 450 FunFam Pectate lyase 66 408 - -
Prci14g2455 450 SUPERFAMILY Pectin lyase-like 67 406 IPR011050 -
Prci14g2455 450 PRINTS Pollen allergen Amb family signature 386 409 IPR018082 -
Prci14g2455 450 PRINTS Pollen allergen Amb family signature 149 165 IPR018082 -
Prci14g2455 450 PRINTS Pollen allergen Amb family signature 113 138 IPR018082 -
Prci14g2455 450 PRINTS Pollen allergen Amb family signature 315 334 IPR018082 -
Prci14g2455 450 PRINTS Pollen allergen Amb family signature 357 381 IPR018082 -
Prci14g2455 450 PRINTS Pollen allergen Amb family signature 89 106 IPR018082 -
Prci14g2455 450 PRINTS Pollen allergen Amb family signature 293 312 IPR018082 -
Prci14g2455 450 PRINTS Pollen allergen Amb family signature 213 234 IPR018082 -
Prci14g2455 450 SMART amb_all 141 338 IPR002022 -
Prci14g2455 450 PANTHER PECTATE LYASE 18-RELATED 31 408 IPR045032 GO:0030570
Prci14g2455 450 Gene3D - 66 408 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci14g2455 Prci-Chr14 31196202 31198996 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci14g2455 1 407 Polysaccharide Lyase AT3G53190 62.053 0.0 526
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci14g2455 K01728 - gmx:100808438 600.897