Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci14g2403 ATGGATCCAAAAGGGAACCTTTGTGCTAACACCTGGGCAAGGTCCTCTTCATTAAACTCTTTGGGGAATGGATTGCATGTTAATCTGTCATCAGACACTGCCTCTTTTACCAATCTCAGTTTGCAGCACAATCAACCATGGGATGTTCCCTCTATTCCAGATTATGGCCTCAGTACTGAAGCTCCATTCAAAGAATTCAACCAACTCTCTCAAACCCAACCTTTCCTTCCCAGCGACCCTAACAATGAGATTAAGATCCCTGCTCAAGAAAATTGTCAAATGAGTGACACATCACAGACTGATAAACTCCCCAATTGGGACGCCAGTGTGATGTTGAATAATTTGTCTTTTCTAGAAGAAAAGATTCATCAGCTCCAGGATCTTGTGCACCTGATTGTTAGCCAGAAAGGCCAATCTTTTGTACGACCTGATGAAGTTGTTGTTCAGGAACGACAGCTCATTACGGCTGATCTTACATCAATTATTGTTCAGTTGATTTCTACTGCAGATAAGAAGTCTGATGAGTCCACTCAGATTGATCTTTCCAAGGGTTGTGGGATGGAGCAAATCTGCAATGTGGAAGAGCATGAATCAAAAGATGAAGAAGACATGGAGGAGGGTGAGAACCTTCTACCTGGGTCCTATGAGATATTACAGTTAGAAAAAGAAGAAATCATGGCACCTCATACACACTTCTGTACGATTTGTGGGAAGGGGTTCAAGCGAGATGCAAATCTTCGGATGCACATGCGAGGTCATGGTGATGAATACAAAACCCCAGCAGCGCTTGCTAAACCTAACAAAGAATCTGGGCCTGAGCCAAAGCTTATAAAGAGGTATTCCTGCCCCTATGCAGGCTGCAAGCGAAACAAGGATCACAGGAAGTTTCAACCTCTGAAGACAATCTTATGTGTCAAAAACCATTACAAAAGAACACACTGTGACAAGAGTTACATTTGCAGCAGGTGCCACACAAAGAAGTTTTCAGTCATGGCTGATCTAAAAACTCATGAAAAGCACTGTGGAAAGGACAAATGGCTCTGTTCATGTGGCACAACTTTTTCAAGGAAAGACAAGCTTTTTGGGCACATTGCTCTTTTCCAAGGTCATACACCAGCCATTCCCTCAGATGACGCAAAAGCCTCGGCTGGGCCACCTGATCTTGAAAGCCAAGAAAACAGCAGTAAGGTAGAAGGTGTAAACTTGAGTTTTGCACCAAATACTTCTGGAGAGAATGGAGTTCAAAACATCATGGATGTGAAAGGTGATATTGATGATCCTATCAATTATTTATCTTCGTTGAACTTTGATACCTCTAACTTTGGTGGCTTTAATGAATTCCCCCGACCTTCATTCGAAGACTCGGAAGTTTCATTCTCCTTCATCATGCCTGGATCTTTCAATTACAATCAGAAGATTGGAGGAGTAGTTTCTGATAATCTTTAG 1446 0.4232 MDPKGNLCANTWARSSSLNSLGNGLHVNLSSDTASFTNLSLQHNQPWDVPSIPDYGLSTEAPFKEFNQLSQTQPFLPSDPNNEIKIPAQENCQMSDTSQTDKLPNWDASVMLNNLSFLEEKIHQLQDLVHLIVSQKGQSFVRPDEVVVQERQLITADLTSIIVQLISTADKKSDESTQIDLSKGCGMEQICNVEEHESKDEEDMEEGENLLPGSYEILQLEKEEIMAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTPAALAKPNKESGPEPKLIKRYSCPYAGCKRNKDHRKFQPLKTILCVKNHYKRTHCDKSYICSRCHTKKFSVMADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPSDDAKASAGPPDLESQENSSKVEGVNLSFAPNTSGENGVQNIMDVKGDIDDPINYLSSLNFDTSNFGGFNEFPRPSFEDSEVSFSFIMPGSFNYNQKIGGVVSDNL 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci14g2403 481 ProSiteProfiles Zinc finger C2H2 type domain profile. 231 258 IPR013087 -
Prci14g2403 481 SUPERFAMILY beta-beta-alpha zinc fingers 230 255 IPR036236 -
Prci14g2403 481 MobiDBLite consensus disorder prediction 375 396 - -
Prci14g2403 481 ProSitePatterns Zinc finger C2H2 type domain signature. 233 253 IPR013087 -
Prci14g2403 481 Coils Coil 108 128 - -
Prci14g2403 481 Gene3D Classic Zinc Finger 215 283 - -
Prci14g2403 481 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 92 178 IPR044300 GO:0010044|GO:0010447
Prci14g2403 481 SMART c2h2final6 318 340 IPR013087 -
Prci14g2403 481 SMART c2h2final6 280 313 IPR013087 -
Prci14g2403 481 SMART c2h2final6 231 253 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci14g2403 Prci-Chr14 30789227 30791792 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci14g2403 199 479 C2H2 Transcription Factor Family AT1G34370 68.750 1.03e-138 399
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Prci14g2403 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci14g2403 - - pcin:129292903 945.266