Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci14g2401 ATGGATCCAAAAGGGAACCTTTGTGCTAACACCTGGGCAAGGTCCTCTTCATTAAACTCTTTGGGGAATGGATTGCATGTTAATCTGTCATCAGACACTGCCTCTTTTACCAATCTCAGTTTGCAGCACAATCAACCATGGGATGTTCCCTCTATTCCAGATTATGGCCTCAGTACTGAAGCTCCATTCAAAGAATTCAACCAACTCTCTCAAACCCAACCTTTCCTTCCCAGCGACCCTAACAATGAGATTAAGATCCCTGCTCAAGAAAATTGTCAAATGAGTGACACATCACAGACTGATAAACTCCCCAATTGGGACGCCAGTGTGATGTTGAATAATTTGTCTTTTCTAGAAGAAAAGATTCATCAGCTCCAGGATCTTGTGCACCTGATTGTTAGCCAGAAAGGCCAATCTTTTGTACGACCTGATGAAGTTGTTGTTCAGGAACGACAGCTCATTACGGCTGATCTTACATCAATTATTGTTCAGTTGATTTCTACTGCAGGTAGTCTTCTCCCTTCTGTCAGGTATACCCTTAAAAATATGAGTCTATTGGTTGGACAGGTTGACCAGCTTCGGGAGAATGCTATTCCTTCTGGATCTGGTGGTCCGAGTACTAGTTCTCATCCACAAAATAATAGTGCAGATAAGAAGTCTGATGAGTCCACTCAGATTGATCTTTCCAAGGGTTGTGGGATGGAGCAAATCTGCAATGTGGAAGAGCATGAATCAAAAGATGAAGAAGACATGGAGGAGGGTGAGAACCTTCTACCTGGGTCCTATGAGATATTACAGTTAGAAAAAGAAGAAATCATGGCACCTCATACACACTTCTGTACGATTTGTGGGAAGGGGTTCAAGCGAGATGCAAATCTTCGGATGCACATGCGAGGTCATGGTGATGAATACAAAACCCCAGCAGCGCTTGCTAAACCTAACAAAGAATCTGGGCCTGAGCCAAAGCTTATAAAGAGGTATTCCTGCCCCTATGCAGGCTGCAAGCGAAACAAGGATCACAGGAAGTTTCAACCTCTGAAGACAATCTTATGTGTCAAAAACCATTACAAAAGAACACACTGTGACAAGAGTTACATTTGCAGCAGGTGCCACACAAAGAAGTTTTCAGTCATGGCTGATCTAAAAACTCATGAAAAGCACTGTGGAAAGGACAAATGGCTCTGTTCATGTGGCACAACTTTTTCAAGGAAAGACAAGCTTTTTGGGCACATTGCTCTTTTCCAAGGTCATACACCAGCCATTCCCTCAGATGACGCAAAAGCCTCGGCTGGGCCACCTGATCTTGAAAGCCAAGAAAACAGCAGTAAGGTAGAAGGTGTAAACTTGAGTTTTGCACCAAATACTTCTGGAGAGAATGGAGTTCAAAACATCATGGATGTGAAAGGTGATATTGATGATCCTATCAATTATTTATCTTCGTTGAACTTTGATACCTCTAACTTTGGTGGCTTTAATGAATTCCCCCGACCTTCATTCGAAGACTCGGAAGTTTCATTCTCCTTCATCATGCCTGGATCTTTCAATTACAATCAGAAGATTGGAGGAGTAGTTTCTGATAATCTTTAG 1587 0.4247 MDPKGNLCANTWARSSSLNSLGNGLHVNLSSDTASFTNLSLQHNQPWDVPSIPDYGLSTEAPFKEFNQLSQTQPFLPSDPNNEIKIPAQENCQMSDTSQTDKLPNWDASVMLNNLSFLEEKIHQLQDLVHLIVSQKGQSFVRPDEVVVQERQLITADLTSIIVQLISTAGSLLPSVRYTLKNMSLLVGQVDQLRENAIPSGSGGPSTSSHPQNNSADKKSDESTQIDLSKGCGMEQICNVEEHESKDEEDMEEGENLLPGSYEILQLEKEEIMAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTPAALAKPNKESGPEPKLIKRYSCPYAGCKRNKDHRKFQPLKTILCVKNHYKRTHCDKSYICSRCHTKKFSVMADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPSDDAKASAGPPDLESQENSSKVEGVNLSFAPNTSGENGVQNIMDVKGDIDDPINYLSSLNFDTSNFGGFNEFPRPSFEDSEVSFSFIMPGSFNYNQKIGGVVSDNL 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci14g2401 528 ProSitePatterns Zinc finger C2H2 type domain signature. 280 300 IPR013087 -
Prci14g2401 528 MobiDBLite consensus disorder prediction 196 226 - -
Prci14g2401 528 Gene3D Classic Zinc Finger 262 330 - -
Prci14g2401 528 Coils Coil 108 128 - -
Prci14g2401 528 ProSiteProfiles Zinc finger C2H2 type domain profile. 278 305 IPR013087 -
Prci14g2401 528 SMART c2h2final6 327 360 IPR013087 -
Prci14g2401 528 SMART c2h2final6 365 387 IPR013087 -
Prci14g2401 528 SMART c2h2final6 278 300 IPR013087 -
Prci14g2401 528 MobiDBLite consensus disorder prediction 422 443 - -
Prci14g2401 528 SUPERFAMILY beta-beta-alpha zinc fingers 277 302 IPR036236 -
Prci14g2401 528 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 92 501 IPR044300 GO:0010044|GO:0010447
Prci14g2401 528 MobiDBLite consensus disorder prediction 196 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci14g2401 Prci-Chr14 30789227 30791792 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci14g2401 246 526 C2H2 Transcription Factor Family AT1G34370 68.750 1.94e-138 400
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Prci14g2401 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci14g2401 - - pcin:129292903 1047.73