Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci14g2368 ATGTACATAAGCCAGTTCCCTCTCTCCTCCATGGCGGCGGCGATTTCTACACCGATGGTTCAGCCCAGTGGCCCTCCGGCGCCGGTGTCGGTTGCGGCGGCGGCATTGTCCGGGGGACAGTTCTCAAATATGTCACTGTACGTTGGTGATCTAGACCCGAATGTGAATGAGGGGCAGCTCTATGATCTGTTCAACCAAGTTGCGACTGTCGTCTCCATCAGGGTTTGCAGGGATCAGACCAGGCGATCCTCTCTCGGTTACGCCTATGTCAACTACGGCACCGCTCAGGATGCGTCTAATGCCATGGAACTTCTCAATTTTACCCCACTTAATGGGAAACCCATTCGTATCATGTTCTCTCATAGAGATCCTAGCATTCGGAAAAGTGGATATGCTAATGTGTTCATTAAAAACCTGGACACATCAATAGATAACAAGGCATTGCATGACACTTTTGCTACCTTTGGAACTGTACTTTCCTGCAAGGTAGCTGTTGACAGCTCTGGCCAGTCAAAAGGGTATGGTTTTGTGCAATTTGACAATGAAGAATCTGCACAAAATGCTATCAAACAGTTGAATGGTATGTTGCTAAATGATAAACAAGTCTATGTTGGACTCTTTGTTCGGCGTCAGGAAAGGGCTCGTGCAAATGGATCACCGAAGTTCACTAATGTATATGTCAAAAATTTTTCTGAGACATATTCTGATGAGGACCTTAAACAGCTTTTCAGGCCATATGGTACGATAACTAGTGCAGTTATCATGAAAGATGCTAATGGGAAGTCTCGATGTTTTGGCTTTGTTAATTTCCAAAACCCAGAATCAGCAGCTGCTGCGGTTGAGAGATTAAATGGAAGCATTATCAATGATGACAAGGTATTGTATGTAGGAAGAGCTCAGAAGAAAGCAGAACGTGAGGCAGAGTTGAAGGTCAAATTTGAGCAGGAAAGAATTAGTAGATATGAGAAATTACAAGGTGCTAATCTCTACTTGAAAAATCTCGATGACAGCATCAATGATGACAAACTAAAGGAGCTATTTTCTGAGTTCGGAACTATTACATCATATAAGGTTATGCTTGATTCACATGGACATAGCAAGGGTTCTGGTTTTGTTGCTTTTTCTACCCCTGAGGAAGCAAGTAAAGCTTTAAATGAAATGAACGGGAAAATGGTAGGTCGAAAACCTCTTTATGTTGCTGTGGCCCAGCGGAAAGAAGAGAGAAAGGCCCTGCAGGCTCATTTTGCTCAAATCCGTGCACCTGGTAGAATCACCCCTCTACCTGCCGGAATTCCTGGATATCATCCTGGAACACCTAGGCTTGCCCCTCAGCAGTTGTACTACGGTCAGGGAACACATGGGCTTATACCACCTCAGCCAGCTGGATTTGGTTTCCAGCAACAACTCTTGCCCGGAATGCGTCCTGGTGTTGCTCCAAATTTCATTATGCCATACCAGCTTCAGAGACAGGTTCAGCCTGGGCAAAGGATGGGTGTTCGACGGGGTGGAAATTTCCAACATGTGCATCAAAACCAGATGGTGCATCGGAACTCCAATCAAGGGTTTAGATATATGGGCAACACTCGAAATGGCATGGACTCATCTGTTGTTCCCCAAGGTCTAGTGAGTCCAATGATGCCATTGCCCTTTGATGGTTCTGGGGTTACTTCAGCTCCCATTGACAATCTACGACCTGGTGCACTTTCTACGACACTTGCCTCAGCTTTGGCCTCAGCTACACCCGAAAATCAGCGCATGATGTTAGGTGAACATCTATATCCCCTTGTAGATCGTCTTGCACCAAATCATACAGCAAAAGTGACAGGGATGTTGCTGGAAATGGACCAATCTGAGGTTATCCATCTCATTGAATCTCCTGAAGACTTGAAAATAAAGGTTTCCGAGGCAATGCAAGTCCTGCATGAAGCTGCATCAGGCACTGAAGTTGAACAGCTTGGCTCATTGTCACTAAATGAATGA 1980 0.4535 MYISQFPLSSMAAAISTPMVQPSGPPAPVSVAAAALSGGQFSNMSLYVGDLDPNVNEGQLYDLFNQVATVVSIRVCRDQTRRSSLGYAYVNYGTAQDASNAMELLNFTPLNGKPIRIMFSHRDPSIRKSGYANVFIKNLDTSIDNKALHDTFATFGTVLSCKVAVDSSGQSKGYGFVQFDNEESAQNAIKQLNGMLLNDKQVYVGLFVRRQERARANGSPKFTNVYVKNFSETYSDEDLKQLFRPYGTITSAVIMKDANGKSRCFGFVNFQNPESAAAAVERLNGSIINDDKVLYVGRAQKKAEREAELKVKFEQERISRYEKLQGANLYLKNLDDSINDDKLKELFSEFGTITSYKVMLDSHGHSKGSGFVAFSTPEEASKALNEMNGKMVGRKPLYVAVAQRKEERKALQAHFAQIRAPGRITPLPAGIPGYHPGTPRLAPQQLYYGQGTHGLIPPQPAGFGFQQQLLPGMRPGVAPNFIMPYQLQRQVQPGQRMGVRRGGNFQHVHQNQMVHRNSNQGFRYMGNTRNGMDSSVVPQGLVSPMMPLPFDGSGVTSAPIDNLRPGALSTTLASALASATPENQRMMLGEHLYPLVDRLAPNHTAKVTGMLLEMDQSEVIHLIESPEDLKIKVSEAMQVLHEAASGTEVEQLGSLSLNE 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci14g2368 659 FunFam Polyadenylate-binding protein 213 309 - -
Prci14g2368 659 SUPERFAMILY RNA-binding domain, RBD 222 408 IPR035979 GO:0003676
Prci14g2368 659 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 223 301 IPR000504 GO:0003723
Prci14g2368 659 SMART rrm2_1 328 400 IPR003954 GO:0003676
Prci14g2368 659 SMART rrm2_1 133 205 IPR003954 GO:0003676
Prci14g2368 659 SMART rrm2_1 224 296 IPR003954 GO:0003676
Prci14g2368 659 SMART rrm2_1 45 118 IPR003954 GO:0003676
Prci14g2368 659 FunFam Polyadenylate-binding protein 37 132 - -
Prci14g2368 659 FunFam Polyadenylate-binding protein 565 646 - -
Prci14g2368 659 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 132 209 IPR000504 GO:0003723
Prci14g2368 659 CDD RRM3_I_PABPs 222 302 - -
Prci14g2368 659 SUPERFAMILY PABC (PABP) domain 516 644 IPR036053 GO:0003723
Prci14g2368 659 Coils Coil 304 324 - -
Prci14g2368 659 CDD RRM2_I_PABPs 130 205 IPR045305 -
Prci14g2368 659 Pfam Poly-adenylate binding protein, unique domain 576 640 IPR002004 GO:0003723
Prci14g2368 659 SMART rrm1_1 45 118 IPR000504 GO:0003723
Prci14g2368 659 SMART rrm1_1 133 205 IPR000504 GO:0003723
Prci14g2368 659 SMART rrm1_1 328 400 IPR000504 GO:0003723
Prci14g2368 659 SMART rrm1_1 224 297 IPR000504 GO:0003723
Prci14g2368 659 Gene3D - 132 206 IPR012677 -
Prci14g2368 659 FunFam Polyadenylate-binding protein 133 206 - -
Prci14g2368 659 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 134 202 IPR000504 GO:0003723
Prci14g2368 659 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 225 292 IPR000504 GO:0003723
Prci14g2368 659 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 329 397 IPR000504 GO:0003723
Prci14g2368 659 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 46 116 IPR000504 GO:0003723
Prci14g2368 659 Gene3D - 315 417 IPR012677 -
Prci14g2368 659 SMART poly_2 580 643 IPR002004 GO:0003723
Prci14g2368 659 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 44 122 IPR000504 GO:0003723
Prci14g2368 659 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 327 404 IPR000504 GO:0003723
Prci14g2368 659 Gene3D - 39 131 IPR012677 -
Prci14g2368 659 FunFam Polyadenylate-binding protein 310 414 - -
Prci14g2368 659 SUPERFAMILY RNA-binding domain, RBD 44 212 IPR035979 GO:0003676
Prci14g2368 659 Gene3D - 567 645 - -
Prci14g2368 659 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 568 645 IPR002004 GO:0003723
Prci14g2368 659 CDD RRM4_I_PABPs 326 404 - -
Prci14g2368 659 Gene3D - 208 314 IPR012677 -
Prci14g2368 659 PANTHER RNA BINDING PROTEIN 43 106 - -
Prci14g2368 659 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 45 640 IPR006515 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci14g2368 Prci-Chr14 30429808 30433634 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci14g2368 43 652 Eukaryotic Initiation Factors Gene Family AT1G71770 59.711 0.0 723
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci14g2368 K13126 - gmx:100783163 1070.46