Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci14g2289 ATGTCCTTCCGCAGTATAGTTCGTGATGTAAGGGATGGTTTTGGAAGCTTATCTAGGCGGGGTTTTGAGGTAAGGCTTCCTGGCCATCACAGGGGCAAGTCACATAGTTCAGTCTATGAGGTGCCAGAACAACCTCCAGTGATACAGAACAGCCGCTGGGCTAGCCTTCCGCCTGAGCTCCTTCATGATGTTATCAAAAGATTGGAAGAAAGTGAGAGCACATGGCCTGCCCGTAAGCATGTGGTCGCATGTGCTGCTGTGTGCAAGTCCTGGAGAGAAATGTGCAAAGAAATTGTAAGCAATCCAGAGTTCTGTGGGAAAATTACTTTTCCTGTTTCCTTGAAGCAGCCTGGGCCTCGGGATGGAATGATCCAGTGTTCCATCAAGAGAGACAAATCTAACCTGACATACCACCTCTTTCTTTGTCTAAGTCCTGCCTTGCTTGTTGAGAATGGAAAGTTTCTGCTCTCTGCTAAACGGACTAGACGAACAACTTGCAGGGAGTACATTATATCCATGAATGCTGATAGCATGTCAAGATCTAGTAGCACTTATATTGGGAAGCTGAGGTCAAATTTTCTGGGCACCAAATTCCTAATATATGATACACAGCCTCCCTATAATTTTGCTCAGCTGCCTCCTCCTTCGCCTAGCCAAAGCCGTCGATTCTATTCTAGAAAGGTTTCTCCAAAAGTCCCCAGCGGCAGCTACAATATTGCTCAGGTCATCTATGAGCTGAATGTGCTTGGTACAAGAGGCCCACGCAAGATGAACTGCACCATGTGCTCGATCCCAGAATCAGCCCTCGAGCCTGCTGGCACTGTCCCAGGCCAGCCAGAACTCCTTCCTTGTGCCATGGATGACTCGTTCCGGAGTACATCCTTTTCAAAATCGATCCGCAGTTCATCCAATTTTAGCAGCTCTAGGTTCTCAGACATCATGTGGACCGGCAACGAAGGAGAGAGTGGCGAGGTAAAAGAGAGGCCACTAATTCTCAAGAACAAGGCTCCAAGATGGCATGAGCAGCTGCAATGTTGGTGCCTTAACTTCCGGGGCAGAGTGACTGTGGCCTCCGTCAAGAATTTCCAGCTGATTGCCGCTGTGCATCCCGCAGCCGGTGCTCCAATGCCGGCACAGCGTGGCCCGGCAGATCACGACAAGGTTATTCTTCAGTTTGGCAAGGTAGGCAAGGATTTGTTCACCATGGACTATCGATATCCCCTGTCGGCATTCCAGGCTTTTGCCATATGCTTGACTAGCTTTGACACTAAACTAGCATGTGAATAG 1287 0.4895 MSFRSIVRDVRDGFGSLSRRGFEVRLPGHHRGKSHSSVYEVPEQPPVIQNSRWASLPPELLHDVIKRLEESESTWPARKHVVACAAVCKSWREMCKEIVSNPEFCGKITFPVSLKQPGPRDGMIQCSIKRDKSNLTYHLFLCLSPALLVENGKFLLSAKRTRRTTCREYIISMNADSMSRSSSTYIGKLRSNFLGTKFLIYDTQPPYNFAQLPPPSPSQSRRFYSRKVSPKVPSGSYNIAQVIYELNVLGTRGPRKMNCTMCSIPESALEPAGTVPGQPELLPCAMDDSFRSTSFSKSIRSSSNFSSSRFSDIMWTGNEGESGEVKERPLILKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIAAVHPAAGAPMPAQRGPADHDKVILQFGKVGKDLFTMDYRYPLSAFQAFAICLTSFDTKLACE 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci14g2289 428 ProSitePatterns Tub family signature 2. 413 428 IPR018066 -
Prci14g2289 428 PANTHER TUBBY-RELATED 31 426 - -
Prci14g2289 428 Pfam F-box domain 53 101 IPR001810 GO:0005515
Prci14g2289 428 SUPERFAMILY F-box domain 45 97 IPR036047 GO:0005515
Prci14g2289 428 SUPERFAMILY Tubby C-terminal domain-like 102 428 IPR025659 -
Prci14g2289 428 Pfam Tub family 114 423 IPR000007 -
Prci14g2289 428 ProSitePatterns Tub family signature 1. 350 363 IPR018066 -
Prci14g2289 428 FunFam Tubby-like F-box protein 48 101 - -
Prci14g2289 428 CDD F-box_AtTLP-like 53 97 - -
Prci14g2289 428 Gene3D Tubby Protein; Chain A 112 422 IPR025659 -
Prci14g2289 428 Gene3D - 48 102 - -
Prci14g2289 428 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Prci14g2289 428 PRINTS Tubby superfamily signature 236 263 IPR000007 -
Prci14g2289 428 PRINTS Tubby superfamily signature 350 366 IPR000007 -
Prci14g2289 428 PRINTS Tubby superfamily signature 406 428 IPR000007 -
Prci14g2289 428 PRINTS Tubby superfamily signature 332 349 IPR000007 -
Prci14g2289 428 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Prci14g2289 428 PRINTS Tubby superfamily signature 385 404 IPR000007 -
Prci14g2289 428 FunFam Tubby-like F-box protein 110 428 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci14g2289 Prci-Chr14 29942050 29946637 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci14g2289 1 428 TUB Transcription Factor Family AT1G76900 66.813 0.0 572
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Prci14g2289 Tub 5.1e-114 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci14g2289 K19600 - cave:132183777 694.115