Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci14g2249 ATGGCAGATCTTACTAGCTACGGGAATGCCGACCGTGGCTTGGAGCAGGCATTGATTTCTTTGAAAAAGGGTGCCCAACTGCTTAAATGTGGTCGGAAAGGAAAGCCCAAGTTTTATCAATTCAGGCTTTCCAATGATGAATCATCTTTAATCTGGATTTCAAGCAGTGGAGAAAGAAGATTGAATCTTTCTTCTGTCTTAAGAATTATTCCTGGACAAAGAACAGCTGTTTTTCAACGGTATCTGAGTCCTGAGAAGGACTATCTGTCCTTTTCCCTTATTTATAACAACGGAAAGCAGTCTCTTGATTTGATTTGCAAGGATAAAGTTGAAGCAGAAGTGTGGATTGCTGGCCTCAAAGCTCTGATATCTTCTGGCCAAGGTGGGCGGTCCAAAATTGATGGGTGGAATGATGGGGGTCTCTATCTTGATGATAACAGAGACTTGACATCAATTAGTCCAAGTGAAAGCTCAGTTAGTACACTAGATATTGAATCCCCTGATACTTCTGTGAATTCTAATCCTAACACTTCTTCAAAGTCCTTTCGACCGGTGAAGTCTGTGAATTCTGAAAGATCACATTCATTGCTAGACCCTACAAATATGCAAGCAAAGGGATCTGGTTCAGATGCTTTTCGAGTTAGTGTTTCAAGTGCCCCCAGCTCATCCAGCCATGGATCTGCTCCAGATGATTGTGATGCTCTGGGTGATGTATACATATGGGGGGAGGTTATCACTGAGAATGTTATGGGAGTTGATGCAGATAAAATTTTCAATCACTTCAGTCCTAGGGTAGATGTGCTTTTGCCTAAGCCACTGGAGTCCAGTGTAGTTTTAGACGTACATCATATAGCATGTGGCGTTAAACATGCTGCACTAGTCACAAGGCAAGGTGAAGTATTTACTTGGGGTGAAGAATCTGGAGGACGTCTAGGCCATGGTGTTGAGAACAATGTGGTTCTACCTTGTCTAGTTGAAGCTCTGGCTTCTACAACTGTTGATGTTGTTGCTTGTGGGGAGTTTCACACCTGCGCTGTTACATTGGCTGGGGAGCTATATACTTGGGGTGATGGAACTCATAATGCTGGACTTCTTGGTCATGGCACTGATGTAAGTCATTGGATACCGAAACGAATTTCAGGTCTACTAGAGGGGCTTCAAGTTGCTTTTGTCACTTGTGGTCCATGGCACACAGCCTTGATAACTTCAACTGGGCAACTCTTCACATTTGGTGATGGAACATTTGGTGTCTTGGGTCATGGAGATAGGGAGAATGTTTCATATCCTAGAGAAGTACAATCATTGTCAGGGTTAAGAACAATAGCTGTTGCATGTGGAGTGTGGCATACTGCAGCTGTGATCGAGGTTATTGTGACACAATCCAGTGCAAGTGTATCATCTGGTAAATTGTTTACTTGGGGTGATGGAGACAAAAATCGCCTTGGACATGGAGACAAGGAGGCCCGACTTGAACCAACTTGTGTGCCTTTGCTCATTGATTACAATTTTTGTAAAATTGCTTGTGGTCACAGTTTGACAGTTGGCCTCACAACATCAGGACGTGTTTTTACAATGGGAAGCACTGTTTATGGTCAACTCGGCAATCCACAGTCTGATGGAAAGCTTCCCTGCTTGGTCGAAGACAATCTTTCTGAAGACTCTGTTGAAGAAATTGCATGTGGTGCTTATCATGTTGCAGTTTTAACATCCAAAAATGAAGTTTATACGTGGGGGAAGGGTGCTAATGGAAGGTTGGGTCATGGGGATATTGAAGATCGAAAAACCCCAACTTTGGTTGAGGCTTTGAAAGATAGACATGTTAAAAATATTGCGTGTGGTTCAAACTACTCTGCTGCCATATGCCTTCATAAATGGGTGTCTGGTGCTGAGCAGTCTCAGTGCTCTACTTGTAGACAGCCATTTGGTTTCACAAGAAAGAGGCACAACTGTTATAATTGTGGGCTTGTGCATTGCCACTCATGCAGTTCAAGGAAAGCATTGAGAGCAGCTCTGGCTCCTAATCCTGGAAAGCCATATCGTGTTTGTGATTCTTGTTTTGTAAAATTGAACAAGGTGACAGAAGTTGGCATTAATAATAGAAGGAATGCCATGCCTCGTTTGTCTGGTGAAAACAAGGACAGGTTAGACAAGGCTGAGATCAGGTTGGCCAAGTCACCGATTCCTTCTAATATGGATTTGATAAAGCAGCTAGATAGCAAGGCAGCTAGACAAGGGAAGAAGACTGATACATTCTCCCTGGTTCGCACATCACAAGCCCCTTTGCTGCAGCTGAAAGATGTTGCCTTGTCTACTGCTGTTGATCTGAGACGTACAGCTCCTAGGCCAGTTCTGACATCATCTGGAGTAAGCTCTAGGTCTGTCTCTCCTTTTTCTAGAAGACCAAGTCCACCTCGTTCAGCTACGCCTATTCCAACATCAGGACTTTCTTTCTCAAAAAGTATGACTGACAGTCTGAAGAAAACGAATGAACTTTTAAATCATGAAGTACTGAAGTTACGCACTCAGGTTGAGAGCCTGAGAAAAAGGTGTGATCTGCAAGAATTAGAGCTTCAAAGGGCAGAAAACAGAACTCAGGAAGCTATGGCACTGGCTGCTGAGGAATCTGCTAAATCTAAAGCTGCAAAAGAAGTTATAAAGTCACTTACAGCACAGCTTAAAGATCTAGCTGAGAGACTACCTCCAGGAGCTTATGACACTGACAGCATCCGGCCAGCTTACCTGCCAAACAGTTTGGAACCAAATGGCATCCACTATCCTGACTCGAATGGGGAGGGACATACCAGAGCGGAGTCAATCAGTGGCTCTAGCCTGGCCTCTTTTGTTCTTGAATCTTCTCTTTTCAACAAAACTGAGGTCACAGGAACTCATGCAGCCAATCGTTACCATCAAAACCGGGTGCTTGTGCCTTCCAATGGGACAAATGAATACCCAAATGTTAGACTTACCAATGGTGGTGTGTTTCAGGCAACTAGCAGTAGTATATTAGATTCTGCTGATGGCAGGAATTCTGGGCCTCTCCAAGATGGTGAGAGTGGTTCAAGATTAAGGAATGTTGTACTGGCAGCTAATAATCAAATTGAGGCAGAATGGATTGAACAGTATGAACCTGGGGTGTATATAACACTCATGGCATTGAGTGATGGGACGAGAGATCTAAAACGAGTGCGGTTCAGCCGGCGAAGATTTGGAGAGCACCAAGCAGAGACTTGGTGGTCTGAGAATCGTGAGAAGGTATATGAAAGGTACAATGTTCGAAGTAGCACCGAGAAGTCCTCAAGCCAAGCAGCTCATGGGGCAGAGAGTGCAGTTTCACCTGTTTCATAA 3345 0.4398 MADLTSYGNADRGLEQALISLKKGAQLLKCGRKGKPKFYQFRLSNDESSLIWISSSGERRLNLSSVLRIIPGQRTAVFQRYLSPEKDYLSFSLIYNNGKQSLDLICKDKVEAEVWIAGLKALISSGQGGRSKIDGWNDGGLYLDDNRDLTSISPSESSVSTLDIESPDTSVNSNPNTSSKSFRPVKSVNSERSHSLLDPTNMQAKGSGSDAFRVSVSSAPSSSSHGSAPDDCDALGDVYIWGEVITENVMGVDADKIFNHFSPRVDVLLPKPLESSVVLDVHHIACGVKHAALVTRQGEVFTWGEESGGRLGHGVENNVVLPCLVEALASTTVDVVACGEFHTCAVTLAGELYTWGDGTHNAGLLGHGTDVSHWIPKRISGLLEGLQVAFVTCGPWHTALITSTGQLFTFGDGTFGVLGHGDRENVSYPREVQSLSGLRTIAVACGVWHTAAVIEVIVTQSSASVSSGKLFTWGDGDKNRLGHGDKEARLEPTCVPLLIDYNFCKIACGHSLTVGLTTSGRVFTMGSTVYGQLGNPQSDGKLPCLVEDNLSEDSVEEIACGAYHVAVLTSKNEVYTWGKGANGRLGHGDIEDRKTPTLVEALKDRHVKNIACGSNYSAAICLHKWVSGAEQSQCSTCRQPFGFTRKRHNCYNCGLVHCHSCSSRKALRAALAPNPGKPYRVCDSCFVKLNKVTEVGINNRRNAMPRLSGENKDRLDKAEIRLAKSPIPSNMDLIKQLDSKAARQGKKTDTFSLVRTSQAPLLQLKDVALSTAVDLRRTAPRPVLTSSGVSSRSVSPFSRRPSPPRSATPIPTSGLSFSKSMTDSLKKTNELLNHEVLKLRTQVESLRKRCDLQELELQRAENRTQEAMALAAEESAKSKAAKEVIKSLTAQLKDLAERLPPGAYDTDSIRPAYLPNSLEPNGIHYPDSNGEGHTRAESISGSSLASFVLESSLFNKTEVTGTHAANRYHQNRVLVPSNGTNEYPNVRLTNGGVFQATSSSILDSADGRNSGPLQDGESGSRLRNVVLAANNQIEAEWIEQYEPGVYITLMALSDGTRDLKRVRFSRRRFGEHQAETWWSENREKVYERYNVRSSTEKSSSQAAHGAESAVSPVS 1114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci14g2249 1114 Gene3D - 13 129 IPR011993 -
Prci14g2249 1114 SUPERFAMILY FYVE/PHD zinc finger 624 695 IPR011011 -
Prci14g2249 1114 MobiDBLite consensus disorder prediction 153 230 - -
Prci14g2249 1114 SUPERFAMILY PH domain-like 15 123 - -
Prci14g2249 1114 FunFam Putative E3 ubiquitin-protein ligase HERC1 630 698 - -
Prci14g2249 1114 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 443 453 IPR000408 -
Prci14g2249 1114 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 637 696 IPR013083 -
Prci14g2249 1114 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 572 623 IPR000408 -
Prci14g2249 1114 Gene3D - 461 636 IPR009091 -
Prci14g2249 1114 Gene3D - 177 460 IPR009091 -
Prci14g2249 1114 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 284 294 IPR000408 -
Prci14g2249 1114 MobiDBLite consensus disorder prediction 783 801 - -
Prci14g2249 1114 Pfam Regulator of chromosome condensation (RCC1) repeat 405 453 IPR000408 -
Prci14g2249 1114 Pfam Regulator of chromosome condensation (RCC1) repeat 350 401 IPR000408 -
Prci14g2249 1114 Pfam Regulator of chromosome condensation (RCC1) repeat 298 346 IPR000408 -
Prci14g2249 1114 Pfam Regulator of chromosome condensation (RCC1) repeat 573 620 IPR000408 -
Prci14g2249 1114 Pfam Regulator of chromosome condensation (RCC1) repeat 467 514 IPR000408 -
Prci14g2249 1114 Pfam Regulator of chromosome condensation (RCC1) repeat 519 568 IPR000408 -
Prci14g2249 1114 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 520 571 IPR000408 -
Prci14g2249 1114 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 58 893 - -
Prci14g2249 1114 Pfam Pleckstrin homology domain 15 123 IPR001849 -
Prci14g2249 1114 MobiDBLite consensus disorder prediction 153 228 - -
Prci14g2249 1114 Coils Coil 829 898 - -
Prci14g2249 1114 MobiDBLite consensus disorder prediction 783 820 - -
Prci14g2249 1114 MobiDBLite consensus disorder prediction 1092 1114 - -
Prci14g2249 1114 ProSiteProfiles BRX domain profile. 1035 1090 IPR013591 -
Prci14g2249 1114 CDD PH_PLC_plant-like 12 124 - -
Prci14g2249 1114 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 298 349 IPR000408 -
Prci14g2249 1114 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 236 297 IPR000408 -
Prci14g2249 1114 FunFam PH, RCC1 and FYVE domains-containing protein 1 207 457 - -
Prci14g2249 1114 FunFam PH, RCC1 and FYVE domains-containing protein 1 458 629 - -
Prci14g2249 1114 Pfam Transcription factor regulating root and shoot growth via Pin3 1034 1089 IPR013591 -
Prci14g2249 1114 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 628 690 IPR017455 -
Prci14g2249 1114 CDD FYVE_like_SF 633 686 - -
Prci14g2249 1114 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 468 519 IPR000408 -
Prci14g2249 1114 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 391 401 IPR000408 -
Prci14g2249 1114 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 350 404 IPR000408 -
Prci14g2249 1114 Pfam FYVE zinc finger 624 690 IPR000306 GO:0046872
Prci14g2249 1114 SUPERFAMILY RCC1/BLIP-II 235 625 IPR009091 -
Prci14g2249 1114 PRINTS Chromosome condensation regulator RCC1 signature 509 527 IPR000408 -
Prci14g2249 1114 PRINTS Chromosome condensation regulator RCC1 signature 407 421 IPR000408 -
Prci14g2249 1114 PRINTS Chromosome condensation regulator RCC1 signature 391 407 IPR000408 -
Prci14g2249 1114 PRINTS Chromosome condensation regulator RCC1 signature 300 316 IPR000408 -
Prci14g2249 1114 PRINTS Chromosome condensation regulator RCC1 signature 350 366 IPR000408 -
Prci14g2249 1114 PRINTS Chromosome condensation regulator RCC1 signature 567 588 IPR000408 -
Prci14g2249 1114 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 405 456 IPR000408 -
Prci14g2249 1114 SMART fyve_4 622 691 IPR000306 GO:0046872
Prci14g2249 1114 Pfam Transcription factor BRX N-terminal domain 873 906 IPR027988 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci14g2249 Prci-Chr14 29522931 29531235 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci14g2249 1036 1092 Major Intrinsic Protein MIP AT1G31880 54.386 8.01e-14 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci14g2249 - - gmx:100783270 1758.04