Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci14g2179 ATGGATCCTATTGGTTATGTGGATGATAAAAGTGAAAGCAGACTGTATATTGGTAACCTCGATCTTAGAATAACAGAAGCAGCTCTTATAAAAATGTTTTCTCCTTATGGGAAGATTATATCTGAGGATTTCTTGTGGCACACTCGTGGCCCTAAGCGTGGAGAGCCACGCGGCTTTGCTTTTATTCAGTATAGCTCAAAAGAGGAAGCAGAAATGGCCAAGGAGAAAATGCACGGCAAATTAGCTTGTGGCCGGCCACTGGTTGTTCGGCTTGCTAGTGAGAAGAGCCAGTTAGAAACGGCCAATAACTCTTCAAAAGCCATGGGAGAAGGGCACAAGATACACTTTACAGGTAATGGCGTAGGACAGACAAGTCGTAGTGCAAAAATAGCTGCAATAAAGAACAAGTTGAAATCAATAGAGGAGGAGAGCTCTAGGCCCAAGAAACAGAAGCAAACTGATGATGTGTCTTGA 474 0.4325 MDPIGYVDDKSESRLYIGNLDLRITEAALIKMFSPYGKIISEDFLWHTRGPKRGEPRGFAFIQYSSKEEAEMAKEKMHGKLACGRPLVVRLASEKSQLETANNSSKAMGEGHKIHFTGNGVGQTSRSAKIAAIKNKLKSIEEESSRPKKQKQTDDVS 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci14g2179 157 CDD RRM_RBM18 14 93 IPR039157 -
Prci14g2179 157 Gene3D - 10 107 IPR012677 -
Prci14g2179 157 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 13 94 IPR000504 GO:0003723
Prci14g2179 157 SMART rrm1_1 14 90 IPR000504 GO:0003723
Prci14g2179 157 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 15 87 IPR000504 GO:0003723
Prci14g2179 157 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 51 152 - -
Prci14g2179 157 MobiDBLite consensus disorder prediction 137 157 - -
Prci14g2179 157 SUPERFAMILY RNA-binding domain, RBD 9 107 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci14g2179 Prci-Chr14 28976371 28978859 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci14g2179 13 95 Eukaryotic Initiation Factors Gene Family AT3G16380 37.349 1.59e-12 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci14g2179 K24527 - gmx:100804800 247.284