Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci14g2170 ATGCGAAAACCGAGATCAAGGGACTTCCACAAGCAGCAACGGCTTGCAGAGGAAGATGAGATAAAGCTTTTGGACTCATGGATTCAATCCCAGAAACCGGACTCCGGATGTAACCCTATGTCATTTGCCCCTTTATCCTCCAAGGACCCTGTAGGTCGCATTGATGGCAATACATTTTCGCGTTATGTGGGTGTCACGAGGTTTGACCAATTGCCAATTTCCAAGAAAACCAAGGATGGATTGTTAGAAGCTAAGTTTGTTAAGATGACCGATATCCAAAGGGCTTCTTTGCCCCATGCGCTTTGCGGGCGAGATATTTTGGGTGCATCAAAAACTGGGTCTGGAAAAACCTTGGCTTTCATTATTCCGGTCTTGGAAAAGTTATATAGAGAGAAATGGGGGCCTGAAGATGGGGTAGGCAGCATCATCATATCCCCTACAAGAGAATTAGCTGGTCAACTCTTTGATGTTTTAAAAAGCGTTGGTAAGCACCATATTTTCAGTGCTGGCCTGCTGATTGGTGGTCGAAAGGAAATTAATGTTGAGAAAGAACGCGTAAATGAGCTGAACATTTTGATCTGCACACCTGGTCGCCTTCTACAACACATGGATGAAACCCCAAACTTTGATTGTTCACAGATTCAGGTGTTGGTGCTAGATGAGGCAGATCGGATTCTTGACAGTGGATTTAAGAAGGAACTAAATGCGATAATATCACAGCTTCCTAAGCATAGACAAACCCTACTCTTCTCAGCAACTCAAACTAAGTCTGTTGAAGTTCTTGCAAGACTAAGTTTAAAGGACCCAGAGTATCTGAGTGTCCATCAAGAGTCTGTGACTGCCACCCCTACTCTCTTGAGACAGCTTGTGATGATTGTTCCTCTGGACCAAAAGTTAGATATGCTGTGGAGTTTCATAAAGTCCCATCTTAACTCCAAAATACTTGTCTTTCTCTCTAGCTGTAAACAGGTAAAATTTGTTTTTGAAGCATTTAAGAAACTTCGCCCTGGCATACCCTTGAAATGCCTTCATGGGAGGATGAAGCAGGAAAGAAGAATGGCAATATATTCTGAGTTTTGTGAGAAGCGGTCAATACTCTTGTCAACTGATGTGGCTGCAAGAGGGCTTGATTTTAATAAGGCGGTTGACTGGGTTGTTCAGGTGGATTGTCCTGAAAATGTAGCATCTTACATACACAGAGTTGGCAGAACTGCTCGCTACAAGTCTGGGGGTAGGTCAGTTTTATTTTTGATGCCTTCAGAGATGAAAATGCTTGAAAATTTAGAAGCAGCTAAAGTTCCAGTACATCTTAATAAGCCTAGGAAGGAACGACTGCAACCAGTTTCTGGTTTGTTAGCAGCATTACTGGTCAAGTACCCTGATCTCCAGCAATGGGCAAAAAGGGCCTTCATAACATATTTGAGATCCATTCATATCCAGAAGGATAAAGAAATCTTTGATCTTATGAAATTGCCTATTGATGAATATTCAGCATCATTAGGTCTGCCCATGACCCCAAAAACCCGATTTCTTAACCAAAAAATTACATCTAAAGCTGCGTCAACAAAACCAATTTTACCGGAACCGAAAGATTCTCACAGAGAAATTGCATTGGAGGTTCCAGGAGAGAATCTGGACGTTAATGGTCCTGAGGAAGAGGAAAAAGGCCTTCTTTTGCCGGACAATTCCTCTGATGAAGGGGAAGGGAAAGCACATGAAATTGTAGATGTCATACCACCAACGCGTGTTTCAAAGAAAAAGAAGCTCAAGATCAACATTCATAGACCTATGGGGACTAGAGTTGTATTTGATGATGAAGGTAATGCTCTACCTCCACTAGCTAGGATTGCTGATACACAAATTGGCAAGGAAACACTGCTGCTGGATCCAGAACAAAAAGCTGAATACTATAGAAAGATGCGTGAGGAGTTGAAGAAGGTTGACAAAGAAGACAAGCTTGTGCAACAACAGCGTCGGAGAGAGAAGAAAATGAAGGAAAAGATGAAGTGGAAGGAAAGAATTGCCGAAGAGGATGACGACGATATTTCTGGGTCAGAAGGAGATCAAGCTGCAGATAGAAGGCATAAAAAGAGTAAGATATATTTTGATGGTGATAGTGATGTCGACGCTAAAGGTACTGAAGTCATAGGAGGAAAAGAGGGTATCATCTCCAAGCCTGTTACGTTGGAGGAGCAAGAAGCATTGGCTCTGAAGTTGCTAAATTCTATGCACTCATAG 2238 0.4231 MRKPRSRDFHKQQRLAEEDEIKLLDSWIQSQKPDSGCNPMSFAPLSSKDPVGRIDGNTFSRYVGVTRFDQLPISKKTKDGLLEAKFVKMTDIQRASLPHALCGRDILGASKTGSGKTLAFIIPVLEKLYREKWGPEDGVGSIIISPTRELAGQLFDVLKSVGKHHIFSAGLLIGGRKEINVEKERVNELNILICTPGRLLQHMDETPNFDCSQIQVLVLDEADRILDSGFKKELNAIISQLPKHRQTLLFSATQTKSVEVLARLSLKDPEYLSVHQESVTATPTLLRQLVMIVPLDQKLDMLWSFIKSHLNSKILVFLSSCKQVKFVFEAFKKLRPGIPLKCLHGRMKQERRMAIYSEFCEKRSILLSTDVAARGLDFNKAVDWVVQVDCPENVASYIHRVGRTARYKSGGRSVLFLMPSEMKMLENLEAAKVPVHLNKPRKERLQPVSGLLAALLVKYPDLQQWAKRAFITYLRSIHIQKDKEIFDLMKLPIDEYSASLGLPMTPKTRFLNQKITSKAASTKPILPEPKDSHREIALEVPGENLDVNGPEEEEKGLLLPDNSSDEGEGKAHEIVDVIPPTRVSKKKKLKINIHRPMGTRVVFDDEGNALPPLARIADTQIGKETLLLDPEQKAEYYRKMREELKKVDKEDKLVQQQRRREKKMKEKMKWKERIAEEDDDDISGSEGDQAADRRHKKSKIYFDGDSDVDAKGTEVIGGKEGIISKPVTLEEQEALALKLLNSMHS 745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci14g2170 745 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 294 456 IPR001650 -
Prci14g2170 745 PANTHER RNA HELICASE 65 617 - -
Prci14g2170 745 MobiDBLite consensus disorder prediction 686 708 - -
Prci14g2170 745 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 66 94 IPR014014 GO:0003724
Prci14g2170 745 MobiDBLite consensus disorder prediction 655 678 - -
Prci14g2170 745 Gene3D - 284 523 IPR027417 -
Prci14g2170 745 MobiDBLite consensus disorder prediction 655 708 - -
Prci14g2170 745 Pfam Domain of unknown function (DUF4217) 452 507 IPR025313 -
Prci14g2170 745 Gene3D - 57 278 IPR027417 -
Prci14g2170 745 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 218 226 IPR000629 -
Prci14g2170 745 SMART DUF4217_3 447 510 IPR025313 -
Prci14g2170 745 Pfam Helicase conserved C-terminal domain 298 407 IPR001650 -
Prci14g2170 745 SMART ultradead3 85 289 IPR014001 -
Prci14g2170 745 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 98 420 IPR027417 -
Prci14g2170 745 CDD DEADc_DDX10 77 275 - -
Prci14g2170 745 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 97 272 IPR014001 -
Prci14g2170 745 Coils Coil 637 673 - -
Prci14g2170 745 CDD SF2_C_DEAD 286 417 - -
Prci14g2170 745 Pfam DEAD/DEAH box helicase 90 259 IPR011545 GO:0003676|GO:0005524
Prci14g2170 745 SMART helicmild6 325 408 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci14g2170 Prci-Chr14 28896935 28906851 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci14g2170 65 429 Eukaryotic Initiation Factors Gene Family AT3G19760 28.108 3.18e-38 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci14g2170 K14776 - gmx:100792106 1121.3