Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Prci14g2088 | ATGGAAGATGAGAGAGATGCTGAGGATGCAATTCGTGCACTTGATCGGGCAGAATTTGGTCGGAAGGGACGAAGACTTCGTGTGGAATGGACAAAACATGAACGTGGCATTAGAAGGCCTGGTAGTTCAAGAAGATCTTCGGCAAATTCAAGGCCATCAAAGACTTTATTTGTTATTAATTTTGATACATATCACACCAGGACTAGGGATTTGGAGAGGCACTTTGAGCCATATGGCAAGATAGTTAGTGTGAGGATTAGAAGGAATTTTGCATTTGTCCAGTATGAATCATGTGATGATGCCATCAGAGCATTGGAAGCTACAAATATGAGCAAGTTACTGGATCGAGTTATCACAGTTGAATATGCTGTAGAGAATGATGATGACAGGAGGAATGCACATAGTCCTGATAGAAGCCATGATCGTCCACGTGATATAAGCTATGATAGAAAGCGATCGCCCAGTCCTTATCACCGAGAAAGAGGCAGCCCTGATTATGGTCGTGGCTCTAGTCCATATAGAAGAGAGAGGAGCAGCCCTGACTATGGTCATAGCCGTAGTCGAAGTTCCCAACAGATTGAGAGAGGTAGCCCTGATTATAATCAGAGGAGCCGTAGTCCATATGGAAGAGAGAGGGATGGTTCTGACCCTGTTCATGGCTCTAGCCATAGTCCTCATCATAAAGAACGGGCCAGAAGTGACCGTGGCAATTCTCACTCCCATAGTCCTAATGGAAGAGAGAGGGTAAGCCCTCAAAATGGCAGTTCTGACCACAGTCCTCTCTATGCAAAGAGGGCTAGCCCTGAAAATGGTCACGGCTCTATAAGTAGTCCTGATGCAAGAGGCGATGGCAGTCCTTACAATGGTGATGAAGGTGACCAAAGTTCCATGCCTGAGCCCAAGGACAACACTATTGATGGTGCTCCTGAAAGCCCCATGAATGAAACATACCGCAGCCATTCTCCTGCTGCTGAAGAATGA | 981 | 0.4608 | MEDERDAEDAIRALDRAEFGRKGRRLRVEWTKHERGIRRPGSSRRSSANSRPSKTLFVINFDTYHTRTRDLERHFEPYGKIVSVRIRRNFAFVQYESCDDAIRALEATNMSKLLDRVITVEYAVENDDDRRNAHSPDRSHDRPRDISYDRKRSPSPYHRERGSPDYGRGSSPYRRERSSPDYGHSRSRSSQQIERGSPDYNQRSRSPYGRERDGSDPVHGSSHSPHHKERARSDRGNSHSHSPNGRERVSPQNGSSDHSPLYAKRASPENGHGSISSPDARGDGSPYNGDEGDQSSMPEPKDNTIDGAPESPMNETYRSHSPAAEE | 326 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Prci14g2088 | 326 | MobiDBLite | consensus disorder prediction | 184 | 204 | - | - | |
Prci14g2088 | 326 | SMART | rrm1_1 | 55 | 121 | IPR000504 | GO:0003723 | |
Prci14g2088 | 326 | MobiDBLite | consensus disorder prediction | 243 | 260 | - | - | |
Prci14g2088 | 326 | MobiDBLite | consensus disorder prediction | 128 | 326 | - | - | |
Prci14g2088 | 326 | Gene3D | - | 41 | 140 | IPR012677 | - | |
Prci14g2088 | 326 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 56 | 118 | IPR000504 | GO:0003723 | |
Prci14g2088 | 326 | MobiDBLite | consensus disorder prediction | 128 | 183 | - | - | |
Prci14g2088 | 326 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 54 | 125 | IPR000504 | GO:0003723 | |
Prci14g2088 | 326 | SUPERFAMILY | RNA-binding domain, RBD | 39 | 131 | IPR035979 | GO:0003676 | |
Prci14g2088 | 326 | FunFam | Serine/arginine-rich splicing factor RS31 | 46 | 136 | - | - | |
Prci14g2088 | 326 | SUPERFAMILY | RNA-binding domain, RBD | 1 | 49 | IPR035979 | GO:0003676 | |
Prci14g2088 | 326 | PANTHER | SERINE/ARGININE RICH SPLICING FACTOR | 1 | 69 | - | - | |
Prci14g2088 | 326 | MobiDBLite | consensus disorder prediction | 205 | 242 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Prci14g2088 | Prci-Chr14 | 28151378 | 28155291 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Prci14g2088 | 7 | 146 | Eukaryotic Initiation Factors Gene Family | AT3G16380 | 25.342 | 8.65e-07 | 48.5 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Prci14g2088 | K12893 | - | gmx:100796509 | 450.669 |