Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci14g2088 ATGGAAGATGAGAGAGATGCTGAGGATGCAATTCGTGCACTTGATCGGGCAGAATTTGGTCGGAAGGGACGAAGACTTCGTGTGGAATGGACAAAACATGAACGTGGCATTAGAAGGCCTGGTAGTTCAAGAAGATCTTCGGCAAATTCAAGGCCATCAAAGACTTTATTTGTTATTAATTTTGATACATATCACACCAGGACTAGGGATTTGGAGAGGCACTTTGAGCCATATGGCAAGATAGTTAGTGTGAGGATTAGAAGGAATTTTGCATTTGTCCAGTATGAATCATGTGATGATGCCATCAGAGCATTGGAAGCTACAAATATGAGCAAGTTACTGGATCGAGTTATCACAGTTGAATATGCTGTAGAGAATGATGATGACAGGAGGAATGCACATAGTCCTGATAGAAGCCATGATCGTCCACGTGATATAAGCTATGATAGAAAGCGATCGCCCAGTCCTTATCACCGAGAAAGAGGCAGCCCTGATTATGGTCGTGGCTCTAGTCCATATAGAAGAGAGAGGAGCAGCCCTGACTATGGTCATAGCCGTAGTCGAAGTTCCCAACAGATTGAGAGAGGTAGCCCTGATTATAATCAGAGGAGCCGTAGTCCATATGGAAGAGAGAGGGATGGTTCTGACCCTGTTCATGGCTCTAGCCATAGTCCTCATCATAAAGAACGGGCCAGAAGTGACCGTGGCAATTCTCACTCCCATAGTCCTAATGGAAGAGAGAGGGTAAGCCCTCAAAATGGCAGTTCTGACCACAGTCCTCTCTATGCAAAGAGGGCTAGCCCTGAAAATGGTCACGGCTCTATAAGTAGTCCTGATGCAAGAGGCGATGGCAGTCCTTACAATGGTGATGAAGGTGACCAAAGTTCCATGCCTGAGCCCAAGGACAACACTATTGATGGTGCTCCTGAAAGCCCCATGAATGAAACATACCGCAGCCATTCTCCTGCTGCTGAAGAATGA 981 0.4608 MEDERDAEDAIRALDRAEFGRKGRRLRVEWTKHERGIRRPGSSRRSSANSRPSKTLFVINFDTYHTRTRDLERHFEPYGKIVSVRIRRNFAFVQYESCDDAIRALEATNMSKLLDRVITVEYAVENDDDRRNAHSPDRSHDRPRDISYDRKRSPSPYHRERGSPDYGRGSSPYRRERSSPDYGHSRSRSSQQIERGSPDYNQRSRSPYGRERDGSDPVHGSSHSPHHKERARSDRGNSHSHSPNGRERVSPQNGSSDHSPLYAKRASPENGHGSISSPDARGDGSPYNGDEGDQSSMPEPKDNTIDGAPESPMNETYRSHSPAAEE 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci14g2088 326 MobiDBLite consensus disorder prediction 184 204 - -
Prci14g2088 326 SMART rrm1_1 55 121 IPR000504 GO:0003723
Prci14g2088 326 MobiDBLite consensus disorder prediction 243 260 - -
Prci14g2088 326 MobiDBLite consensus disorder prediction 128 326 - -
Prci14g2088 326 Gene3D - 41 140 IPR012677 -
Prci14g2088 326 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 56 118 IPR000504 GO:0003723
Prci14g2088 326 MobiDBLite consensus disorder prediction 128 183 - -
Prci14g2088 326 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 54 125 IPR000504 GO:0003723
Prci14g2088 326 SUPERFAMILY RNA-binding domain, RBD 39 131 IPR035979 GO:0003676
Prci14g2088 326 FunFam Serine/arginine-rich splicing factor RS31 46 136 - -
Prci14g2088 326 SUPERFAMILY RNA-binding domain, RBD 1 49 IPR035979 GO:0003676
Prci14g2088 326 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 1 69 - -
Prci14g2088 326 MobiDBLite consensus disorder prediction 205 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci14g2088 Prci-Chr14 28151378 28155291 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci14g2088 7 146 Eukaryotic Initiation Factors Gene Family AT3G16380 25.342 8.65e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci14g2088 K12893 - gmx:100796509 450.669