Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Prci14g2087 | ATGAGGTCTATCTTTTGCGGAAACTTTGAATATGATGCTCGGCAGTCTGATCTGGAGCGGCTTTTTAGAAGATATGGGAAGGTTGATAGGGTGGATATGAAGTCTGGGTTTGCCTTCATCTATATGGAAGATGAGAGAGATGCTGAGGATGCAATTCGTGCACTTGATCGGGCAGAATTTGGTCGGAAGGGACGAAGACTTCGTGTGGAATGGACAAAACATGAACGTGGCATTAGAAGGCCTGGTAGTTCAAGAAGATCTTCGGCAAATTCAAGGCCATCAAAGACTTTATTTGTTATTAATTTTGATACATATCACACCAGGACTAGGGATTTGGAGAGGCACTTTGAGCCATATGGCAAGATAGTTAGTGTGAGGATTAGAAGGAATTTTGCATTTGTCCAGTATGAATCATGTGATGATGCCATCAGAGCATTGGAAGCTACAAATATGAGCAAGTTACTGGATCGAGTTATCACAGTTGAATATGCTGTAGAGAATGATGATGACAGGAGGAATGCACATAGTCCTGATAGAAGCCATGATCGTCCACGTGATATAAGCTATGATAGAAAGCGATCGCCCAGTCCTTATCACCGAGAAAGAGGCAGCCCTGATTATGGTCGTGGCTCTAGTCCATATAGAAGAGAGAGGAGCAGCCCTGACTATGGTCATAGCCGTAGTCGAAGTTCCCAACAGATTGAGAGAGGTAGCCCTGATTATAATCAGAGGAGCCGTAGTCCATATGGAAGAGAGAGGGATGGTTCTGACCCTGTTCATGGCTCTAGCCATAGTCCTCATCATAAAGAACGGGCCAGAAGTGACCGTGGCAATTCTCACTCCCATAGTCCTAATGGAAGAGAGAGGGTAAGCCCTCAAAATGGCAGTTCTGACCACAGTCCTCTCTATGCAAAGAGGGCTAGCCCTGAAAATGGTCACGGCTCTATAAGTAGTCCTGATGCAAGAGGCGATGGCAGTCCTTACAATGGTGATGAAGGTGACCAAAGTTCCATGCCTGAGCCCAAGGACAACACTATTGATGGTGCTCCTGAAAGCCCCATGAATGAAACATACCGCAGCCATTCTCCTGCTGCTGAAGAATGA | 1104 | 0.4574 | MRSIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMEDERDAEDAIRALDRAEFGRKGRRLRVEWTKHERGIRRPGSSRRSSANSRPSKTLFVINFDTYHTRTRDLERHFEPYGKIVSVRIRRNFAFVQYESCDDAIRALEATNMSKLLDRVITVEYAVENDDDRRNAHSPDRSHDRPRDISYDRKRSPSPYHRERGSPDYGRGSSPYRRERSSPDYGHSRSRSSQQIERGSPDYNQRSRSPYGRERDGSDPVHGSSHSPHHKERARSDRGNSHSHSPNGRERVSPQNGSSDHSPLYAKRASPENGHGSISSPDARGDGSPYNGDEGDQSSMPEPKDNTIDGAPESPMNETYRSHSPAAEE | 367 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Prci14g2087 | 367 | FunFam | Serine/arginine-rich splicing factor RS31 | 87 | 177 | - | - | |
Prci14g2087 | 367 | Gene3D | - | 1 | 84 | IPR012677 | - | |
Prci14g2087 | 367 | Gene3D | - | 85 | 181 | IPR012677 | - | |
Prci14g2087 | 367 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 97 | 159 | IPR000504 | GO:0003723 | |
Prci14g2087 | 367 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 4 | 62 | IPR000504 | GO:0003723 | |
Prci14g2087 | 367 | MobiDBLite | consensus disorder prediction | 169 | 367 | - | - | |
Prci14g2087 | 367 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 2 | 74 | IPR000504 | GO:0003723 | |
Prci14g2087 | 367 | MobiDBLite | consensus disorder prediction | 169 | 224 | - | - | |
Prci14g2087 | 367 | SUPERFAMILY | RNA-binding domain, RBD | 2 | 169 | IPR035979 | GO:0003676 | |
Prci14g2087 | 367 | CDD | RRM1_AtRSp31_like | 2 | 73 | - | - | |
Prci14g2087 | 367 | MobiDBLite | consensus disorder prediction | 246 | 283 | - | - | |
Prci14g2087 | 367 | FunFam | Serine/arginine-rich splicing factor RS31 | 1 | 85 | - | - | |
Prci14g2087 | 367 | SMART | rrm1_1 | 96 | 162 | IPR000504 | GO:0003723 | |
Prci14g2087 | 367 | SMART | rrm1_1 | 3 | 70 | IPR000504 | GO:0003723 | |
Prci14g2087 | 367 | PANTHER | SERINE/ARGININE RICH SPLICING FACTOR | 96 | 295 | - | - | |
Prci14g2087 | 367 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 95 | 166 | IPR000504 | GO:0003723 | |
Prci14g2087 | 367 | MobiDBLite | consensus disorder prediction | 284 | 301 | - | - | |
Prci14g2087 | 367 | MobiDBLite | consensus disorder prediction | 225 | 245 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Prci14g2087 | Prci-Chr14 | 28151378 | 28155291 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Prci14g2087 | 3 | 187 | Eukaryotic Initiation Factors Gene Family | AT1G49760 | 22.772 | 8.49e-08 | 52.0 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Prci14g2087 | K12893 | - | gmx:100796509 | 530.791 |