Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci14g2087 ATGAGGTCTATCTTTTGCGGAAACTTTGAATATGATGCTCGGCAGTCTGATCTGGAGCGGCTTTTTAGAAGATATGGGAAGGTTGATAGGGTGGATATGAAGTCTGGGTTTGCCTTCATCTATATGGAAGATGAGAGAGATGCTGAGGATGCAATTCGTGCACTTGATCGGGCAGAATTTGGTCGGAAGGGACGAAGACTTCGTGTGGAATGGACAAAACATGAACGTGGCATTAGAAGGCCTGGTAGTTCAAGAAGATCTTCGGCAAATTCAAGGCCATCAAAGACTTTATTTGTTATTAATTTTGATACATATCACACCAGGACTAGGGATTTGGAGAGGCACTTTGAGCCATATGGCAAGATAGTTAGTGTGAGGATTAGAAGGAATTTTGCATTTGTCCAGTATGAATCATGTGATGATGCCATCAGAGCATTGGAAGCTACAAATATGAGCAAGTTACTGGATCGAGTTATCACAGTTGAATATGCTGTAGAGAATGATGATGACAGGAGGAATGCACATAGTCCTGATAGAAGCCATGATCGTCCACGTGATATAAGCTATGATAGAAAGCGATCGCCCAGTCCTTATCACCGAGAAAGAGGCAGCCCTGATTATGGTCGTGGCTCTAGTCCATATAGAAGAGAGAGGAGCAGCCCTGACTATGGTCATAGCCGTAGTCGAAGTTCCCAACAGATTGAGAGAGGTAGCCCTGATTATAATCAGAGGAGCCGTAGTCCATATGGAAGAGAGAGGGATGGTTCTGACCCTGTTCATGGCTCTAGCCATAGTCCTCATCATAAAGAACGGGCCAGAAGTGACCGTGGCAATTCTCACTCCCATAGTCCTAATGGAAGAGAGAGGGTAAGCCCTCAAAATGGCAGTTCTGACCACAGTCCTCTCTATGCAAAGAGGGCTAGCCCTGAAAATGGTCACGGCTCTATAAGTAGTCCTGATGCAAGAGGCGATGGCAGTCCTTACAATGGTGATGAAGGTGACCAAAGTTCCATGCCTGAGCCCAAGGACAACACTATTGATGGTGCTCCTGAAAGCCCCATGAATGAAACATACCGCAGCCATTCTCCTGCTGCTGAAGAATGA 1104 0.4574 MRSIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMEDERDAEDAIRALDRAEFGRKGRRLRVEWTKHERGIRRPGSSRRSSANSRPSKTLFVINFDTYHTRTRDLERHFEPYGKIVSVRIRRNFAFVQYESCDDAIRALEATNMSKLLDRVITVEYAVENDDDRRNAHSPDRSHDRPRDISYDRKRSPSPYHRERGSPDYGRGSSPYRRERSSPDYGHSRSRSSQQIERGSPDYNQRSRSPYGRERDGSDPVHGSSHSPHHKERARSDRGNSHSHSPNGRERVSPQNGSSDHSPLYAKRASPENGHGSISSPDARGDGSPYNGDEGDQSSMPEPKDNTIDGAPESPMNETYRSHSPAAEE 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci14g2087 367 FunFam Serine/arginine-rich splicing factor RS31 87 177 - -
Prci14g2087 367 Gene3D - 1 84 IPR012677 -
Prci14g2087 367 Gene3D - 85 181 IPR012677 -
Prci14g2087 367 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 97 159 IPR000504 GO:0003723
Prci14g2087 367 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 62 IPR000504 GO:0003723
Prci14g2087 367 MobiDBLite consensus disorder prediction 169 367 - -
Prci14g2087 367 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 74 IPR000504 GO:0003723
Prci14g2087 367 MobiDBLite consensus disorder prediction 169 224 - -
Prci14g2087 367 SUPERFAMILY RNA-binding domain, RBD 2 169 IPR035979 GO:0003676
Prci14g2087 367 CDD RRM1_AtRSp31_like 2 73 - -
Prci14g2087 367 MobiDBLite consensus disorder prediction 246 283 - -
Prci14g2087 367 FunFam Serine/arginine-rich splicing factor RS31 1 85 - -
Prci14g2087 367 SMART rrm1_1 96 162 IPR000504 GO:0003723
Prci14g2087 367 SMART rrm1_1 3 70 IPR000504 GO:0003723
Prci14g2087 367 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 96 295 - -
Prci14g2087 367 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 95 166 IPR000504 GO:0003723
Prci14g2087 367 MobiDBLite consensus disorder prediction 284 301 - -
Prci14g2087 367 MobiDBLite consensus disorder prediction 225 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci14g2087 Prci-Chr14 28151378 28155291 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci14g2087 3 187 Eukaryotic Initiation Factors Gene Family AT1G49760 22.772 8.49e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci14g2087 K12893 - gmx:100796509 530.791