Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci14g2050 ATGATCGAAACCAGACGATGTCACTACAGCGTACTTACATGGTCTCACAGCTTACTCTTGCTCCTCCTAGCAACGATGAACGTCTCCGGCGGCGCCGTTCCACAGTCAGCTACTGCACCATCGCCGCTGCCGCTTTCGCCGGTGACTCCCGATGGCATCGACTTTGTGATTTTTGTCAAGGCCACAGCCATCGTGTGCGCTGTCCTCTTCATCACCGTCTTTTCGGTCTACCTCAATTACTGGACCGCGTTAGCGTTCGCCGGCCAGCACCAGTTGGGCGGTGGCCTTGACGGCGTAAATTGGCGGTGTTCTTGCTCCCGAGGAATCGACCGGGAAGTCCTGGACACATTCCCGATCCTCGTGTATTCCACCATCAAAAACCACAAGATCGGAAAAGGAGAGCTCGAATGCGCAGTGTGCTTGAGCGAGTTCGAAGACCACGAGACTCTCCGGTTGATACCAAAATGCAACCATGTGTTTCACCCCGAGTGTATCGATGCCTGGTTAGCTTCTCATGTGACTTGTCCCATTTGCCGCGCAAATCTGAAACCAGATTCCGGCGAAGTAGCAGTCAGAATGCCGACTCAGTTGAACGCTAATGAATTGAGCGTAGAGAGTGGAGGCAGAAGCAGGAGAGGTGAAGCGAGCGAAACACAGTATCACCAAGTGGCGCGGGTACCAAACGACGTCGGTCCGAGCAGCAGCAACTCTTCAGGAACAGGTAGAGCCACCATGGACGAAGCCAGAGCTAAGCAAAGTCGAGATCAAAGATCGAGATGGAGAATGTTCGAGAAGTTTCCGAGATCCAACTCAACGGGGCATTCGCTGGTGGAACAGCCTAGGACGAACAACGACACGGAGAGGTATACGCTAAGGTTGCCAGAGGAGGTGCGGAGGTATATTCTGATGAATCACGCGGCCATCGGGCATTCGGTGAGCTACCATGGGGTGATGAAAGGGGTGGGTTGGAGCGACAGCGAAGGAAGCAGCAGAGGTAAAAGGAACATGACGCCTGCAAGTGTTCATCGCAAAGATTAA 1038 0.5366 MIETRRCHYSVLTWSHSLLLLLLATMNVSGGAVPQSATAPSPLPLSPVTPDGIDFVIFVKATAIVCAVLFITVFSVYLNYWTALAFAGQHQLGGGLDGVNWRCSCSRGIDREVLDTFPILVYSTIKNHKIGKGELECAVCLSEFEDHETLRLIPKCNHVFHPECIDAWLASHVTCPICRANLKPDSGEVAVRMPTQLNANELSVESGGRSRRGEASETQYHQVARVPNDVGPSSSNSSGTGRATMDEARAKQSRDQRSRWRMFEKFPRSNSTGHSLVEQPRTNNDTERYTLRLPEEVRRYILMNHAAIGHSVSYHGVMKGVGWSDSEGSSRGKRNMTPASVHRKD 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci14g2050 345 CDD RING-H2_EL5-like 136 179 - -
Prci14g2050 345 MobiDBLite consensus disorder prediction 200 284 - -
Prci14g2050 345 MobiDBLite consensus disorder prediction 228 243 - -
Prci14g2050 345 FunFam E3 ubiquitin-protein ligase ATL6 99 185 - -
Prci14g2050 345 SMART ring_2 137 178 IPR001841 -
Prci14g2050 345 MobiDBLite consensus disorder prediction 322 345 - -
Prci14g2050 345 MobiDBLite consensus disorder prediction 247 264 - -
Prci14g2050 345 MobiDBLite consensus disorder prediction 268 284 - -
Prci14g2050 345 ProSiteProfiles Zinc finger RING-type profile. 137 179 IPR001841 -
Prci14g2050 345 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 110 187 IPR013083 -
Prci14g2050 345 SUPERFAMILY RING/U-box 128 186 - -
Prci14g2050 345 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 42 270 - -
Prci14g2050 345 Pfam Ring finger domain 136 179 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci14g2050 Prci-Chr14 27858192 27860293 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci14g2050 18 304 Rapid Response to Elicitors AT3G05200 38.176 7.68e-52 175
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci14g2050 K10664 - cave:132171153 212.616