Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci14g2042 ATGCATAGATCTCTCATGTTGGATAGTTCAACTTCAGAATGTGGGCAAATCCATATCGTGTGTGAAGGAGAAAGTCTACCTCACGGGTCTCTTTCACCGCATCAGAGCGCTCATTGCTTTGAATTGCAGCCTAATTTTTGTCACAGTGTCTCTTTTACTGGTCGTTCTGCGCTTTCTGAATGTTGTTGGTTTGACAGTATCCGGCCATATCCATTCACATACTGTGCCCTTTGCTATTTCTTAGATGGATCAATTCCTGCTATCAAGTTATCAACTTATAGGCAACGATTAAACTCTGGAAAAGATGTAGCACAAAATGAAAGCAACTTACAGAAAGTGTCTTCTTTACCGAGGAACAGGGGATCTGAGTTTTCGTGCATGATAAAAGAGGCTCACATCTTGGGGATGGCTCTTGGTATCCCATGTCTGAATGGGATTGAAGAAGGTGAAGCTCAATGTGCTTTGTTGAACTCTGAATTATTGTGTGATGGATGTTTCAGTTCAGATTCAGATATCTTTCTTTTTGGTGCCAGGACAGTGTATAGGGATATTTGCCTTGATGGTGGATATGTTGTTTGCTATGAGATGGAAGACATTGAAAGGAAACTTGGATTTGGAAGGGACTCATTGATTGCTCTTGCCTTACTTCTTGGGAGTGACTATAGTCAAGGAGTTTATGGTCTAGGTCCGGAGCTTGCTTGTCAGATAGTTAGGTCAATTGGCGACAAATGTGTGCTCCAAAAATTTGCTTCTGAAGGAATTGAATGTCTGAAAACACTGAAAGGCGCAAAGAAGATGGGGCAAGTTTTCAAGAACAATAAAGAAAATATGTTGGACCATGATATGGCATTGAGTCATGGAGGCAAGAACAATTCACAAAGAGATTATAACTTCTTGCAAGTTATCAATGCTTATGTGAAGCCGAAGTGCCACCCAGCAGATTCTGATATTGTGATGAGGGTTCTTGCTCAGTATCCATTTCAACGCAGTAAACTCCAACAGATATGTGCTGAATTCTTTCAGTGGCCTCCGGAGAAAACAGATGAATATATCCTTCCAAAAATAGCTGAAAGGGATTTACGGCGATTTGCCAATTTGCGCTTAACTTCATCACAAGTAGGAGTGAATCTTCCTTTGAATGAGATCCCTGTGAAGTGTCCTGTCTCGGAAATCATAAAGTGCCGAAAAGTTCAAGGAAGAGAATGCTACGAGGTGTCATGGAATGAAATGGATGGACTTGGAACTTCAATAGTACCGGCTGATCTTTTAAAAAGTGCTTGTCCTGAGAAGATTCTAGAATTTGAGGAGAAAAAGTGTTGGCTTAAGAAACAAAATATTCAGAAAAGAAGGCCAAAGAAATCAGAAACTGCATCTTCTATGATTGAACTTGACCTGAGACTCACGAATCTGTCACTGGATGTCAATCTGGTAGACCATGCCAGTCACAAGACATCTGATTCATCAGAGCAGGTATTTCATGATGCATCTGCCATGGAAGAAGCTGATCTGAATAGCAGAAATTTGTCGTATTCATCACATGATGAACAGATTGAATGGGATCAGAATGTGAGGGACACATATGGCAATCAGCAGCAGGGTGATTCCATGGCAAAATATGAGGTCATTGACTTACTGAGTCCTTCCCCACCTAAGCAGTCATGTGCTTCCTCCAGGTGCGCACAGTCTAATGGTGAACATATTGAAGTGATAAATTTGAGTGACTCAGATAGTGACACGTCACCTGAACATAAGAGGAAAGCCAAGGAGCTGAGATTGTTCTTAGCAGGAATTAGGGATGACCTCCATTGA 1809 0.4135 MHRSLMLDSSTSECGQIHIVCEGESLPHGSLSPHQSAHCFELQPNFCHSVSFTGRSALSECCWFDSIRPYPFTYCALCYFLDGSIPAIKLSTYRQRLNSGKDVAQNESNLQKVSSLPRNRGSEFSCMIKEAHILGMALGIPCLNGIEEGEAQCALLNSELLCDGCFSSDSDIFLFGARTVYRDICLDGGYVVCYEMEDIERKLGFGRDSLIALALLLGSDYSQGVYGLGPELACQIVRSIGDKCVLQKFASEGIECLKTLKGAKKMGQVFKNNKENMLDHDMALSHGGKNNSQRDYNFLQVINAYVKPKCHPADSDIVMRVLAQYPFQRSKLQQICAEFFQWPPEKTDEYILPKIAERDLRRFANLRLTSSQVGVNLPLNEIPVKCPVSEIIKCRKVQGRECYEVSWNEMDGLGTSIVPADLLKSACPEKILEFEEKKCWLKKQNIQKRRPKKSETASSMIELDLRLTNLSLDVNLVDHASHKTSDSSEQVFHDASAMEEADLNSRNLSYSSHDEQIEWDQNVRDTYGNQQQGDSMAKYEVIDLLSPSPPKQSCASSRCAQSNGEHIEVINLSDSDSDTSPEHKRKAKELRLFLAGIRDDLH 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci14g2042 602 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 78 571 IPR006084 -
Prci14g2042 602 SMART HhH_4 207 240 IPR008918 GO:0003677|GO:0003824
Prci14g2042 602 FunFam Flap endonuclease GEN-like 1 205 262 - -
Prci14g2042 602 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 205 366 IPR036279 -
Prci14g2042 602 SUPERFAMILY PIN domain-like 77 220 IPR029060 -
Prci14g2042 602 CDD H3TH_XPG-like 208 251 - -
Prci14g2042 602 Gene3D - 67 204 - -
Prci14g2042 602 Gene3D - 206 272 - -
Prci14g2042 602 SMART xpgineu 136 205 IPR006086 GO:0004518
Prci14g2042 602 Pfam XPG I-region 139 220 IPR006086 GO:0004518
Prci14g2042 602 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 210 225 IPR006084 -
Prci14g2042 602 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 135 152 IPR006084 -
Prci14g2042 602 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 77 96 IPR006084 -
Prci14g2042 602 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 156 176 IPR006084 -
Prci14g2042 602 SUPERFAMILY Chromo domain-like 387 439 IPR016197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci14g2042 Prci-Chr14 27756080 27764065 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci14g2042 78 241 Core DNA Replication Machinery Family AT5G26680 26.705 1.25e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci14g2042 K15338 - qsa:O6P43_008236 707.212