Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci14g2040 ATGCATAGATCTCTCATGTTGGATAGTTCAACTTCAGAATGTGGGCAAATCCATATCGTGTGTGAAGGAGAAAGTCTACCTCACGGGTCTCTTTCACCGCATCAGAGCGCTCATTGCTTTGAATTGCAGCCTAATTTTTGTCACAGTATCCGGCCATATCCATTCACATACTGTGCCCTTTGCTATTTCTTAGATGGATCAATTCCTGCTATCAAGTTATCAACTTATAGGCAACGATTAAACTCTGGAAAAGATGTAGCACAAAATGAAAGCAACTTACAGAAAGTGTCTTCTTTACCGAGGAACAGGGGATCTGAGTTTTCGTGCATGATAAAAGAGGCTCACATCTTGGGGATGGCTCTTGGTATCCCATGTCTGAATGGGATTGAAGAAGGTGAAGCTCAATGTGCTTTGTTGAACTCTGAATTATTGTGTGATGGATGTTTCAGTTCAGATTCAGATATCTTTCTTTTTGGTGCCAGGACAGTGTATAGGGATATTTGCCTTGGAGATGGTGGATATGTTGTTTGCTATGAGATGGAAGACATTGAAAGGAAACTTGGATTTGGAAGGGACTCATTGATTGCTCTTGCCTTACTTCTTGGGAGTGACTATAGTCAAGGAGTTTATGGTCTAGGTCCGGAGCTTGCTTGTCAGATAGTTAGGTCAATTGGCGACAAATGTGTGCTCCAAAAATTTGCTTCTGAAGGAATTGAATGTCTGAAAACACTGAAAGGCGCAAAGAAGATGGGGCAAGTTTTCAAGAACAATAAAGAAAATATGTTGGACCATGATATGGCATTGAGTCATGGAGGCAAGAACAATTCACAAAGAGATTATAACTTCTTGCAAGTTATCAATGCTTATGTGAAGCCGAAGTGCCACCCAGCAGATTCTGATATTGTGATGAGGGTTCTTGCTCAGTATCCATTTCAACGCAGTAAACTCCAACAGATATGTGCTGAATTCTTTCAGTGGCCTCCGGAGAAAACAGATGAATATATCCTTCCAAAAATAGCTGAAAGGGATTTACGGCGATTTGCCAATTTGCGCTTAACTTCATCACAAGTAGGAGTGAATCTTCCTTTGAATGAGATCCCTGTGAAGTGTCCTGTCTCGGAAATCATAAAGTGCCGAAAAGTTCAAGGAAGAGAATGCTACGAGGTGTCATGGAATGAAATGGATGGACTTGGAACTTCAATAGTACCGGCTGATCTTTTAAAAAGTGCTTGTCCTGAGAAGATTCTAGAATTTGAGGAGAAAAAGTGTTGGCTTAAGAAACAAAATATTCAGAAAAGAAGGCCAAAGAAATCAGAAACTGCATCTTCTATGATTGAACTTGACCTGAGACTCACGAATCTGTCACTGGATGTCAATCTGGTAGACCATGCCAGTCACAAGACATCTGATTCATCAGAGCAGGTATTTCATGATGCATCTGCCATGGAAGAAGCTGATCTGAATAGCAGAAATTTGTCGTATTCATCACATGATGAACAGATTGAATGGGATCAGAATGTGAGGGACACATATGGCAATCAGCAGCAGGGTGATTCCATGGCAAAATATGAGGTCATTGACTTACTGAGTCCTTCCCCACCTAAGCAGTCATGTGCTTCCTCCAGGTGCGCACAGTCTAATGGTGAACATATTGAAGTGATAAATTTGAGTGACTCAGATAGTGACACGTCACCTGAACATAAGAGGAAAGCCAAGGAGCTGAGATTGTTCTTAGCAGGAATTAGGGATGACCTCCATTGA 1761 0.4134 MHRSLMLDSSTSECGQIHIVCEGESLPHGSLSPHQSAHCFELQPNFCHSIRPYPFTYCALCYFLDGSIPAIKLSTYRQRLNSGKDVAQNESNLQKVSSLPRNRGSEFSCMIKEAHILGMALGIPCLNGIEEGEAQCALLNSELLCDGCFSSDSDIFLFGARTVYRDICLGDGGYVVCYEMEDIERKLGFGRDSLIALALLLGSDYSQGVYGLGPELACQIVRSIGDKCVLQKFASEGIECLKTLKGAKKMGQVFKNNKENMLDHDMALSHGGKNNSQRDYNFLQVINAYVKPKCHPADSDIVMRVLAQYPFQRSKLQQICAEFFQWPPEKTDEYILPKIAERDLRRFANLRLTSSQVGVNLPLNEIPVKCPVSEIIKCRKVQGRECYEVSWNEMDGLGTSIVPADLLKSACPEKILEFEEKKCWLKKQNIQKRRPKKSETASSMIELDLRLTNLSLDVNLVDHASHKTSDSSEQVFHDASAMEEADLNSRNLSYSSHDEQIEWDQNVRDTYGNQQQGDSMAKYEVIDLLSPSPPKQSCASSRCAQSNGEHIEVINLSDSDSDTSPEHKRKAKELRLFLAGIRDDLH 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci14g2040 586 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 189 350 IPR036279 -
Prci14g2040 586 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 60 79 IPR006084 -
Prci14g2040 586 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 139 159 IPR006084 -
Prci14g2040 586 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 194 209 IPR006084 -
Prci14g2040 586 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 118 135 IPR006084 -
Prci14g2040 586 Pfam XPG I-region 122 204 IPR006086 GO:0004518
Prci14g2040 586 CDD H3TH_XPG-like 192 235 - -
Prci14g2040 586 SUPERFAMILY Chromo domain-like 371 423 IPR016197 -
Prci14g2040 586 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 60 558 IPR006084 -
Prci14g2040 586 FunFam Flap endonuclease GEN-like 1 189 246 - -
Prci14g2040 586 Gene3D - 14 188 - -
Prci14g2040 586 SMART HhH_4 191 224 IPR008918 GO:0003677|GO:0003824
Prci14g2040 586 Gene3D - 190 256 - -
Prci14g2040 586 SMART xpgineu 119 189 IPR006086 GO:0004518
Prci14g2040 586 SUPERFAMILY PIN domain-like 55 204 IPR029060 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci14g2040 Prci-Chr14 27756080 27764065 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci14g2040 61 225 Core DNA Replication Machinery Family AT5G26680 26.705 2.09e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci14g2040 K15338 - qsa:O6P43_008236 715.301